Schema for xenoRefSeqAli
  Database: canFam5    Primary Table: xenoRefSeqAli    Row Count: 234,749   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 73smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 2000int(10) unsigned range Number of bases that match that aren't repeats
misMatches 407int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 14int(10) unsigned range Number of inserts in query
qBaseInsert 3856int(10) unsigned range Number of bases inserted in query
tNumInsert 28int(10) unsigned range Number of inserts in target
tBaseInsert 71802int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001308327varchar(255) values Query sequence name
qSize 6794int(10) unsigned range Query sequence size
qStart 10int(10) unsigned range Alignment start position in query
qEnd 6273int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 122894117int(10) unsigned range Target sequence size
tStart 93123int(10) unsigned range Alignment start position in target
tEnd 167332int(10) unsigned range Alignment end position in target
blockCount 29int(10) unsigned range Number of blocks in alignment
blockSizes 47,108,73,116,117,55,96,80,...longblob   Size of each block
qStarts 10,246,354,427,549,675,731,...longblob   Start of each block in query.
tStarts 122726785,122727091,1227592...longblob   Start of each block in target.

Connected Tables and Joining Fields
        canFam5.all_est.qName (via xenoRefSeqAli.qName)
      canFam5.all_mrna.qName (via xenoRefSeqAli.qName)
      canFam5.refGene.name (via xenoRefSeqAli.qName)
      canFam5.refSeqAli.qName (via xenoRefSeqAli.qName)
      canFam5.xenoMrna.qName (via xenoRefSeqAli.qName)
      canFam5.xenoRefFlat.name (via xenoRefSeqAli.qName)
      canFam5.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
732000407001438562871802+-NM_0013083276794106273chr1122894117931231673322947,108,73,116,117,55,96,80,119,113,64,71,109,138,128,70,88,122,131,80,133,73,171,18,13,13,6,13,42,10,246,354,427,549,675,731,829,909,1028,1141,1205,1276,1385,1551,1679,1749,1837,2211,2342,2422,2555,2718,2955,2982,3318,3332,523 ...122726785,122727091,122759269,122761112,122762053,122763056,122765056,122767061,122768145,122769329,122770343,122770717,12277300 ...
731974407001438532871828+-NM_0013083296765106244chr1122894117931231673322947,108,73,116,117,55,96,80,119,113,64,45,109,138,128,70,88,122,131,80,133,73,171,18,13,13,6,13,42,10,246,354,427,549,675,731,829,909,1028,1141,1205,1250,1359,1525,1653,1723,1811,2182,2313,2393,2526,2689,2926,2953,3289,3303,520 ...122726785,122727091,122759269,122761112,122762053,122763056,122765056,122767061,122768145,122769329,122770343,122770743,12277300 ...
732000407001438532871802+-NM_0088136791106270chr1122894117931231673322947,108,73,116,117,55,96,80,119,113,64,71,109,138,128,70,88,122,131,80,133,73,171,18,13,13,6,13,42,10,246,354,427,549,675,731,829,909,1028,1141,1205,1276,1385,1551,1679,1749,1837,2208,2339,2419,2552,2715,2952,2979,3315,3329,522 ...122726785,122727091,122759269,122761112,122762053,122763056,122765056,122767061,122768145,122769329,122770343,122770717,12277300 ...
732964402002138933970302+-NM_006208743867265chr1122894117934731671414216,207,73,117,131,56,98,80,120,110,66,73,109,136,133,70,88,170,51,155,129,81,138,156,171,12,52,43,59,11,51,10,42,45,41,69,52,11, ...6,49,256,329,446,577,633,731,811,931,1041,1107,1180,1289,1448,1581,1651,1739,1910,1961,2116,2246,2327,2467,2623,2925,3028,3080,3 ...122726976,122726992,122759269,122761112,122762048,122763056,122765056,122767061,122768145,122769330,122770341,122770717,12277301 ...
7325103160052982567221+-NM_0012062123181493173chr11228941179707816712526207,73,117,126,61,98,80,120,108,66,73,109,136,133,70,88,171,51,44,100,130,81,133,161,172,118,49,256,329,446,572,633,731,811,931,1041,1107,1180,1289,1448,1581,1651,1739,1910,1969,2013,2113,2243,2324,2457,2619,3055,122726992,122759269,122761112,122762048,122763051,122765056,122767061,122768145,122769330,122770341,122770717,122773010,12277535 ...
7319754530082812467234+-NM_0535352721122721chr1122894117974601671222548,108,73,116,117,55,96,5,77,119,113,64,71,109,133,133,70,88,122,123,131,80,133,73,171,12,78,186,259,381,507,563,659,664,741,860,973,1037,1108,1217,1378,1511,1581,1669,1908,2043,2174,2254,2387,2550,122726995,122727091,122759269,122761112,122762053,122763056,122765056,122765274,122767064,122768145,122769329,122770343,12277071 ...
732401315005292366949+-NM_0011689332778332778chr11228941179746016712524207,73,117,131,56,98,80,120,110,66,73,109,136,133,70,88,170,51,155,129,81,138,154,171,33,240,313,430,561,617,715,795,915,1025,1091,1164,1273,1432,1565,1635,1723,1894,1945,2100,2230,2311,2451,2607,122726992,122759269,122761112,122762048,122763056,122765056,122767061,122768145,122769330,122770341,122770717,122773010,12277535 ...
732338362003762366996+-NM_001082742278152781chr11228941179746016715624238,73,117,131,57,97,80,120,110,66,73,109,136,134,2,65,90,170,156,130,81,129,165,171,5,243,316,433,564,621,718,798,918,1028,1094,1167,1276,1435,1569,1571,1636,1726,1947,2103,2233,2314,2445,2610,122726961,122759269,122761112,122762048,122763056,122765057,122767061,122768145,122769330,122770341,122770717,122773010,12277535 ...
736433290056721222485+-NM_00103016833833862030chr112289411710860413206113129,90,75,63,70,5,111,129,3,64,90,98,45,386,578,668,890,1037,1107,1112,1385,1514,1517,1581,1671,1985,122762056,122765069,122767066,122769357,122770715,122771252,122773010,122778439,122778589,122779921,122780712,122782424,12278546 ...
73736123001957314846++NM_001265722101735989chr112289411733840265410786,37,203,134,44,5,222,208,35,41,173,376,510,554,559,781,338402,338848,611631,617809,625693,630569,644392,653899,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.