Schema for estOrientInfo
  Database: ce11    Primary Table: estOrientInfo    Row Count: 395,510   Data last updated: 2016-06-02
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrIvarchar(255) values Reference sequence chromosome or scaffold
chromStart 392373int(10) unsigned range Start position in chromosome
chromEnd 392738int(10) unsigned range End position in chromosome
name AF071378varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 1smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        ce11.all_est.qName (via estOrientInfo.name)
      ce11.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
587chrI392373392738AF07137800100
587chrI392430392738AF07138000100
632chrI61877716188029AF071359010000
640chrI73000667300279AF071360012000
693chrI1419006014190727AF07136300000
693chrI1419047214190783AF07136100100
635chrII65881816588518AF07137710100
635chrII66052406605487AF071396001100
639chrII71683707168662AF0713831013028
644chrII77567977756908AF071371001220

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.