Schema for intronEst
  Database: ce11    Primary Table: intronEst    Row Count: 288,809   Data last updated: 2016-06-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 635smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 235int(10) unsigned range Number of bases that match that aren't repeats
misMatches 5int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 4int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 97int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AF071377varchar(255) values Query sequence name
qSize 272int(10) unsigned range Query sequence size
qStart 4int(10) unsigned range Alignment start position in query
qEnd 248int(10) unsigned range Alignment end position in query
tName chrIIvarchar(255) values Target sequence name
tSize 15279421int(10) unsigned range Target sequence size
tStart 6588181int(10) unsigned range Alignment start position in target
tEnd 6588518int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 8,14,42,51,14,111,longblob   Size of each block
qStarts 24,33,49,92,143,157,longblob   Start of each block in query.
tStarts 6588181,6588189,6588253,658...longblob   Start of each block in target.

Connected Tables and Joining Fields
        ce11.all_est.qName (via intronEst.qName)
      ce11.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
63523550034397-AF0713772724248chrII152794216588181658851868,14,42,51,14,111,24,33,49,92,143,157,6588181,6588189,6588253,6588295,6588347,6588407,
63923100038561-AF07138328949288chrII152794217168370716866274,22,17,23,27,31,107,1,5,32,49,73,102,133,7168370,7168375,7168407,7168425,7168448,7168476,7168555,
59023110033353+AF0713922645240chrIII13783801676241676526614,87,49,63,12,7,5,19,107,156,220,233,676241,676256,676343,676442,676505,676519,
6791952720395598-AF0713652922280chrIII137838011244262912443496822,8,29,12,126,3,15,54,12,34,43,73,92,218,221,236,12442629,12442652,12442660,12442689,12442710,12443421,12443425,12443442,
6792050740233588-AF0724382842284chrIII137838011244262912443496631,29,95,50,18,56,0,33,63,158,208,226,12442629,12442660,12442689,12442786,12443421,12443440,
6791121700223589+AF0713641881186chrIII1378380112442724124434964112,18,11,42,1,113,132,144,12442724,12443421,12443441,12443454,
63242320011773+AF0713584332428chrIV1749382962188526219350893,50,53,11,72,64,72,10,2,95,145,198,209,281,346,418,6218852,6218947,6219045,6219099,6219114,6219187,6219253,6219340,
686349500113103-AF0713743561356chrV20924180133152771331573455,43,117,34,155,0,5,48,165,200,13315277,13315331,13315427,13315545,13315579,
706890200005564+AF07135793328920chrV2092418015921362159228186115,132,123,68,259,195,28,143,275,398,466,725,15921362,15921540,15922019,15922191,15922311,15922623,
70621110000153+AF07135623813225chrV209241801592255315922818217,195,13,30,15922553,15922623,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.