Schema for xenoMrna
  Database: ci1    Primary Table: xenoMrna    Row Count: 3,031,526   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 227int(10) unsigned Number of bases that match that aren't repeats
misMatches 85int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 393int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 2975int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName AB179031varchar(255) Query sequence name
qSize 2227int(10) unsigned Query sequence size
qStart 1223int(10) unsigned Alignment start position in query
qEnd 1928int(10) unsigned Alignment end position in query
tName Scaffold_1varchar(255) Target sequence name
tSize 972361int(10) unsigned Target sequence size
tStart 547int(10) unsigned Alignment start position in target
tEnd 3834int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 69,99,144,longblob Size of each block
qStarts 1223,1685,1784,longblob Start of each block in query.
tStarts 547,3169,3690,longblob Start of each block in target.

Connected Tables and Joining Fields
        ci1.all_est.qName (via xenoMrna.qName)
      ci1.all_mrna.qName (via xenoMrna.qName)
      ci1.refGene.name (via xenoMrna.qName)
      ci1.refSeqAli.qName (via xenoMrna.qName)
      ci1.xenoRefFlat.name (via xenoMrna.qName)
      ci1.xenoRefGene.name (via xenoMrna.qName)
      ci1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852278500139322975++AB179031222712231928Scaffold_19723615473834369,99,144,1223,1685,1784,547,3169,3690,
5852569800139322975++AK308846285516482395Scaffold_19723615473876369,99,186,1648,2110,2209,547,3169,3690,
5852569800139322975++AK311044283515812328Scaffold_19723615473876369,99,186,1581,2043,2142,547,3169,3690,
58528112700250733343++AK172901513912742189Scaffold_19723615474298469,99,186,54,1274,1742,1841,2135,547,3169,3690,4244,
58528512400249733342++BC149377506318472753Scaffold_19723615474298469,100,186,54,1847,2305,2405,2699,547,3168,3690,4244,
58528812000250133343++D73409620717632672Scaffold_19723615474298469,99,186,54,1763,2225,2324,2618,547,3169,3690,4244,
58529411400250133343++AB078966628118272736Scaffold_19723615474298469,99,186,54,1827,2289,2388,2682,547,3169,3690,4244,
58529411400250133343++D63479623817682677Scaffold_19723615474298469,99,186,54,1768,2230,2329,2623,547,3169,3690,4244,
58529411400260933343++BC03210253967971814Scaffold_19723615474298469,99,186,54,797,1367,1466,1760,547,3169,3690,4244,
58529511300250133343++AK30742619393851294Scaffold_19723615474298469,99,186,54,385,847,946,1240,547,3169,3690,4244,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.