Schema for all_mrna
  Database: dipOrd1    Primary Table: all_mrna    Row Count: 28   Data last updated: 2017-09-24
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 389int(10) unsigned range Number of bases that match that aren't repeats
misMatches 6int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 1164int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName EU817481varchar(255) values Query sequence name
qSize 839int(10) unsigned range Query sequence size
qStart 395int(10) unsigned range Alignment start position in query
qEnd 791int(10) unsigned range Alignment end position in query
tName scaffold_109940varchar(255) values Target sequence name
tSize 2285int(10) unsigned range Target sequence size
tStart 91int(10) unsigned range Alignment start position in target
tEnd 1650int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 7,276,112,longblob   Size of each block
qStarts 395,403,679,longblob   Start of each block in query.
tStarts 91,98,1538,longblob   Start of each block in target.

Connected Tables and Joining Fields
        dipOrd1.mrnaOrientInfo.name (via all_mrna.qName)
      dipOrd1.xenoMrna.qName (via all_mrna.qName)
      dipOrd1.xenoRefGene.name (via all_mrna.qName)
      dipOrd1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5853896001111164+EU817481839395791scaffold_109940228591165037,276,112,395,403,679,91,98,1538,
58538114001111164+EU817485829385781scaffold_109940228591165038,275,112,385,394,669,91,99,1538,
585953560043578455+EU81747911921311175scaffold_16874280973599130631014,5,161,50,284,111,24,226,18,116,131,146,151,316,395,679,790,814,1040,1059,3599,3613,3619,3785,8554,9799,11247,12702,12929,12947,
585824470043588593+EU81748010541311037scaffold_16874280973599130631114,7,159,50,284,111,24,48,40,18,116,131,146,153,316,395,679,790,814,862,902,921,3599,3613,3621,3785,8554,9799,11247,12702,12888,12929,12947,
5856373700334511954+EU817481839131839scaffold_1687428097359916227714,5,161,50,284,111,49,131,146,151,316,395,679,790,3599,3613,3619,3785,8554,9799,16178,
585134772006421311940+EU81748316491631624scaffold_16874280973599169581760,113,48,4,284,111,24,125,222,34,51,173,9,11,2,130,18,163,231,348,397,427,711,822,846,971,1193,1227,1278,1453,1463,1474,1476,1606,3599,3667,3785,3833,8554,9799,11247,12702,16301,16524,16559,16612,16785,16794,16806,16809,16940,
5859375000339711933+EU81748212251841210scaffold_1687428097362016540838,116,50,284,111,24,125,239,184,228,348,427,711,822,846,971,3620,3664,3785,8554,9799,11247,12702,16301,
5855072700340511963+EU817485829255829scaffold_1687428097373016227739,13,9,29,284,111,49,255,302,316,325,385,669,780,3730,3781,3794,3804,8554,9799,16178,
58574828000057205+EU81748412214231199scaffold_16874280978554165356284,111,24,125,224,8,423,707,818,842,967,1191,8554,9799,11247,12702,16301,16527,
5851223001100+EU81747911920126scaffold_1687428097261112623624,121,0,5,26111,26115,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.