Schema for xenoMrna
  Database: dipOrd1    Primary Table: xenoMrna    Row Count: 9,338,095   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 174int(10) unsigned Number of bases that match that aren't repeats
misMatches 66int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 452int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 28013int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK085738varchar(255) Query sequence name
qSize 3451int(10) unsigned Query sequence size
qStart 290int(10) unsigned Alignment start position in query
qEnd 982int(10) unsigned Alignment end position in query
tName scaffold_0varchar(255) Target sequence name
tSize 11421927int(10) unsigned Target sequence size
tStart 11065int(10) unsigned Alignment start position in target
tEnd 39318int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 87,102,51,longblob Size of each block
qStarts 290,539,931,longblob Start of each block in query.
tStarts 11382609,11410425,11410811,longblob Start of each block in target.

Connected Tables and Joining Fields
        dipOrd1.all_mrna.qName (via xenoMrna.qName)
      dipOrd1.xenoRefFlat.name (via xenoMrna.qName)
      dipOrd1.xenoRefGene.name (via xenoMrna.qName)
      dipOrd1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58517466002452228013+-AK0857383451290982scaffold_0114219271106539318387,102,51,290,539,931,11382609,11410425,11410811,
585264700012951295++JU89184188079708scaffold_6362645263442935058270,264,79,444,34429,34794,
5857734001331117+-JL701127885302446scaffold_362391156119082136260,51,302,395,9425,9602,
5857734001331117+-JL72156010511651795scaffold_362391156119082136260,51,651,744,9425,9602,
58569150013061917+-JT913966509119509scaffold_0114219271251913520233,51,119,458,11408407,11409357,
585901500006465++JU694170234322102315scaffold_4657479667971367715,15,11,19,13,17,15,2210,2225,2240,2251,2270,2283,2300,797,832,900,1142,1250,1318,1352,
58522374001241108+-JV7228944843324scaffold_28947164389725101302183,114,3,210,6308,6599,
73151750031193353832+-AB303223743326292974scaffold_011421927128173668754102,17,5,102,2629,2802,2820,2872,11055052,11342244,11342263,11409008,
73151750031193353832+-AB617817738325492894scaffold_011421927128173668754102,17,5,102,2549,2722,2740,2792,11055052,11342244,11342263,11409008,
73151750031193353832+-AB669433749726522997scaffold_011421927128173668754102,17,5,102,2652,2825,2843,2895,11055052,11342244,11342263,11409008,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.