Schema for refGene
  Database: dm2    Primary Table: refGene    Row Count: 35,517   Data last updated: 2020-08-21
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name NM_001258564varchar(255) values Name of gene
chrom chrXvarchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 2326615int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 2401583int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 2327307int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 2400779int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 43int(10) unsigned range Number of exons
exonStarts 2326615,2329107,2329330,232...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 2327350,2329255,2329747,233...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        dm2.all_est.qName (via refGene.name)
      dm2.all_mrna.qName (via refGene.name)
      dm2.flyBaseToRefSeq.value (via refGene.name)
      dm2.mrnaOrientInfo.name (via refGene.name)
      dm2.refFlat.name (via refGene.name)
      dm2.refSeqAli.qName (via refGene.name)
      dm2.xenoMrna.qName (via refGene.name)
      dm2.xenoRefGene.name (via refGene.name)
      dm2.xenoRefSeqAli.qName (via refGene.name)
      hgFixed.gbCdnaInfo.acc (via refGene.name)
      hgFixed.gbMiscDiff.acc (via refGene.name)
      hgFixed.gbSeq.acc (via refGene.name)
      hgFixed.gbWarn.acc (via refGene.name)
      hgFixed.imageClone.acc (via refGene.name)
      hgFixed.refLink.mrnaAcc (via refGene.name)
      hgFixed.refSeqStatus.mrnaAcc (via refGene.name)
      hgFixed.refSeqSummary.mrnaAcc (via refGene.name)
      knownGeneV39.kgXref.refseq (via refGene.name)
      knownGeneV39.knownToRefSeq.value (via refGene.name)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
NM_001258564chrX-2326615240158323273072400779432326615,2329107,2329330,2329815,2330585,2331571,2331979,2336889,2337225,2337572,2338152,2338614,2339279,2339641,2340488,2340772, ...2327350,2329255,2329747,2330516,2331511,2331844,2332185,2337064,2337475,2338032,2338547,2338792,2339542,2340245,2340669,2340915, ...
NM_001382182chr3R-20211825202160612021184720216047620211825,20212087,20212320,20212600,20215361,20215759,20212025,20212198,20212532,20212793,20215573,20216061,
NR_167857chr3R+20966015209818072098180720981807120966015,20981807,
NR_167858chr3R+20966015209818072098180720981807220966015,20969934,20968367,20981807,
NM_001382065chr3R-21749220217819922174999921767347721749220,21750406,21750776,21751228,21751489,21766978,21781375,21750315,21750692,21751037,21751426,21751625,21767371,21781992,
NR_167780chr3R+22251075222541302225413022254130322251075,22253683,22253973,22251210,22253881,22254130,
NM_001382180chr3R-23390763234079632339129023393831923390763,23391639,23391928,23392326,23392582,23392873,23393137,23394000,23407723,23391576,23391869,23392262,23392517,23392777,23393073,23393927,23394313,23407963,
NM_001382126chr3R-23466364234825362347044123482171823466364,23469536,23470423,23470946,23471762,23472057,23473286,23481927,23467216,23469695,23470549,23471132,23471965,23472247,23473330,23482536,
NR_167840chr3R-23755383237566262375662623756626123755383,23756626,
NR_167839chr3R-23755383237569002375690023756900223755383,23756359,23755489,23756900,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.