Schema for xenoMrna
  Database: dm2    Primary Table: xenoMrna    Row Count: 1,812,929   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 619smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 209int(10) unsigned Number of bases that match that aren't repeats
misMatches 61int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 6452int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName BC164433varchar(255) Query sequence name
qSize 337int(10) unsigned Query sequence size
qStart 34int(10) unsigned Alignment start position in query
qEnd 304int(10) unsigned Alignment end position in query
tName chrXvarchar(255) Target sequence name
tSize 22224390int(10) unsigned Target sequence size
tStart 4536973int(10) unsigned Alignment start position in target
tEnd 4543695int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 108,162,longblob Size of each block
qStarts 34,142,longblob Start of each block in query.
tStarts 4536973,4543533,longblob Start of each block in target.

Connected Tables and Joining Fields
        dm2.all_est.qName (via xenoMrna.qName)
      dm2.all_mrna.qName (via xenoMrna.qName)
      dm2.refGene.name (via xenoMrna.qName)
      dm2.refSeqAli.qName (via xenoMrna.qName)
      dm2.xenoRefGene.name (via xenoMrna.qName)
      dm2.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
61920961000016452++BC16443333734304chrX22224390453697345436952108,162,34,142,4536973,4543533,
58510923870021779711739+-EU19048736742773535chr2L2240783426544397628159,120,193,227,437,198,2,143,277,637,2335,2528,2755,3192,3390,3392,22368072,22369103,22378909,22379594,22380345,22380870,22381091,22381147,
58510923870021779711739+-EU19048836742773535chr2L2240783426544397628159,120,193,227,437,198,2,143,277,637,2335,2528,2755,3192,3390,3392,22368072,22369103,22378909,22379594,22380345,22380870,22381091,22381147,
73723318100136189+-BC1653271132424874chr3R2790505319994210199947132117,297,424,577,7910340,7910546,
585207144000000++BC07711011657281079chr2L2240783495774961251351,728,95774,
585207144000000++BC11648311507241075chr2L2240783495774961251351,724,95774,
585207144000000++BC13499512748341185chr2L2240783495774961251351,834,95774,
585209142000000++CR76196711917631114chr2L2240783495774961251351,763,95774,
585253158002108287++DQ1242951437378897chr2L2240783495774962723213,108,90,378,621,807,95774,96017,96182,
585254157002108287++DQ1096741437378897chr2L2240783495774962723213,108,90,378,621,807,95774,96017,96182,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.