Schema for xenoMrna
  Database: equCab1    Primary Table: xenoMrna    Row Count: 6,298,436   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 436int(10) unsigned Number of bases that match that aren't repeats
misMatches 51int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 2713int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName BC047924varchar(255) Query sequence name
qSize 3042int(10) unsigned Query sequence size
qStart 5int(10) unsigned Alignment start position in query
qEnd 492int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 179667691int(10) unsigned Target sequence size
tStart 658int(10) unsigned Alignment start position in target
tEnd 3858int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 44,114,148,181,longblob Size of each block
qStarts 5,49,163,311,longblob Start of each block in query.
tStarts 179663833,179665590,1796665...longblob Start of each block in target.

Connected Tables and Joining Fields
        equCab1.all_est.qName (via xenoMrna.qName)
      equCab1.all_mrna.qName (via xenoMrna.qName)
      equCab1.refGene.name (via xenoMrna.qName)
      equCab1.refSeqAli.qName (via xenoMrna.qName)
      equCab1.xenoRefFlat.name (via xenoMrna.qName)
      equCab1.xenoRefGene.name (via xenoMrna.qName)
      equCab1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58543651000032713+-BC04792430425492chr11796676916583858444,114,148,181,5,49,163,311,179663833,179665590,179666592,179666852,
58545052000032713+-AK131205305417519chr11796676916583873459,114,148,181,17,76,190,338,179663818,179665590,179666592,179666852,
58583717600238612465+-AK16931640403971448chr1179667691658141367159,94,94,225,104,157,180,397,592,686,780,1005,1109,1268,179653555,179663135,179663322,179663652,179665590,179666582,179666853,
58526425170099752743154+-AB000781518804134chr11796676916584697128198,59,147,117,178,161,118,74,60,167,3,70,93,144,36,170,137,42,126,209,96,96,151,5,59,114,148,181,0,198,257,404,674,852,1220,1338,1412,1472,1639,1642,1712,1823,2114,2485,2655,2849,2921,3062,3284,3380,3476,3627,3632,3691,3805,3 ...179620720,179621568,179635395,179635921,179637639,179637820,179640825,179641723,179641891,179647292,179647472,179648557,17964924 ...
5852546614001010562549985+-AJ580324522904216chr11796676916585380326102,199,59,147,117,366,11,24,6,109,72,62,162,69,87,143,85,175,143,168,94,94,225,104,157,180,0,102,301,360,507,804,1254,1338,1362,1368,1477,1549,1611,1782,1857,1962,2105,2544,2719,3165,3360,3454,3548,3773,3877,4036,179613888,179620719,179621568,179635395,179635921,179637639,179638032,179638143,179638778,179640834,179641723,179641889,17964729 ...
5852544611001010652549994+-AK14733573004884708chr11796676916585380726106,199,59,147,117,366,11,24,6,109,72,62,162,69,87,143,85,175,143,159,94,94,225,104,157,180,488,594,793,852,999,1296,1746,1830,1854,1860,1969,2041,2103,2274,2349,2454,2597,3036,3211,3657,3852,3946,4040,4265,4369,4528,179613884,179620719,179621568,179635395,179635921,179637639,179638032,179638143,179638778,179640834,179641723,179641889,17964729 ...
5852545610001010652549994+-AK14767270262144434chr11796676916585380726106,199,59,147,117,366,11,24,6,109,72,62,162,69,87,143,85,175,143,159,94,94,225,104,157,180,214,320,519,578,725,1022,1472,1556,1580,1586,1695,1767,1829,2000,2075,2180,2323,2762,2937,3383,3578,3672,3766,3991,4095,4254,179613884,179620719,179621568,179635395,179635921,179637639,179638032,179638143,179638778,179640834,179641723,179641889,17964729 ...
5852545610001010652549994+-AK14769369541414361chr11796676916585380726106,199,59,147,117,366,11,24,6,109,72,62,162,69,87,143,85,175,143,159,94,94,225,104,157,180,141,247,446,505,652,949,1399,1483,1507,1513,1622,1694,1756,1927,2002,2107,2250,2689,2864,3310,3505,3599,3693,3918,4022,4181,179613884,179620719,179621568,179635395,179635921,179637639,179638032,179638143,179638778,179640834,179641723,179641889,17964729 ...
5852554610001010562549985+-AB25785770232114431chr11796676916585380726106,199,59,147,117,366,11,24,6,109,72,62,162,69,87,143,85,175,143,168,94,94,225,104,157,180,211,317,516,575,722,1019,1469,1553,1577,1583,1692,1764,1826,1997,2072,2177,2320,2759,2934,3380,3575,3669,3763,3988,4092,4251,179613884,179620719,179621568,179635395,179635921,179637639,179638032,179638143,179638778,179640834,179641723,179641889,17964729 ...
5852192467001210872440364+-AB05155539251773923chr117966769139694699226219,59,147,117,178,161,118,74,60,167,3,70,93,144,36,170,137,40,44,126,209,96,99,12,11,69,177,396,455,602,872,1050,1418,1536,1610,1670,1837,1840,1910,2021,2312,2683,2853,3005,3045,3119,3260,3482,3578,3697,3728,3854,179620699,179621568,179635395,179635921,179637639,179637820,179640825,179641723,179641891,179647292,179647472,179648557,17964924 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.