Schema for estOrientInfo
  Database: fr3    Primary Table: estOrientInfo    Row Count: 381,101   Data last updated: 2019-03-07
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom HE591497varchar(255) values Reference sequence chromosome or scaffold
chromStart 59425int(10) unsigned range Start position in chromosome
chromEnd 61460int(10) unsigned range End position in chromosome
name AL840572varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        fr3.all_est.qName (via estOrientInfo.name)
      fr3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585HE5914975942561460AL84057211000
585HE5914977313173841AL84092610000
585HE5914977314773906AL83806810000
586HE591497162397164145AL84245400000
586HE591497162398162795AL84272100000
586HE591497162426162791AL84267200000
586HE591497162478162793AL84290700000
590HE591497677650680960AL83477440000
590HE591497678992680735AL83712920000
590HE591497678992680931AL83490030000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.