Schema for intronEst
  Database: fr3    Primary Table: intronEst    Row Count: 224,709   Data last updated: 2019-03-07
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 274int(10) unsigned range Number of bases that match that aren't repeats
misMatches 4int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 1757int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AL840572varchar(255) values Query sequence name
qSize 307int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 278int(10) unsigned range Alignment end position in query
tName HE591497varchar(255) values Target sequence name
tSize 1070096int(10) unsigned range Target sequence size
tStart 59425int(10) unsigned range Alignment start position in target
tEnd 61460int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 30,76,172,longblob   Size of each block
qStarts 29,59,135,longblob   Start of each block in query.
tStarts 59425,59495,61288,longblob   Start of each block in target.

Connected Tables and Joining Fields
        fr3.all_est.qName (via intronEst.qName)
      fr3.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852744000021757-AL8405723070278HE59149710700965942561460330,76,172,29,59,135,59425,59495,61288,
5853334260001347+AL8409263630363HE591497107009673131738412269,94,0,269,73131,73747,
5853852250001347+AL8380684120412HE591497107009673147739062253,159,0,253,73147,73747,
5904985510042801+AL8347745090509HE5914971070096677650680960541,133,102,113,120,0,41,174,276,389,677650,678993,679647,680642,680840,
5903203600021414+AL83712934314343HE59149710700966789926807353134,102,93,14,148,250,678992,679647,680642,
5904286600031499+AL83490046222462HE59149710700966789926809314134,102,113,91,22,156,258,371,678992,679647,680642,680840,
5904631600031499+AL83519050333503HE59149710700966789926809614134,102,113,121,33,167,269,382,678992,679647,680642,680840,
590357024000185+AL8353573810381HE5914971070096680719681185236,345,0,36,680719,680840,
58935411401111318+AL8355503700370HE591604765554580234581921351,245,73,0,51,297,580234,581603,581848,
589236511001552+AL84198827330273HE5916047655546436946444892100,143,30,130,643694,644346,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.