Schema for xenoMrna
  Database: galGal5    Primary Table: xenoMrna    Row Count: 4,862,144   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 456int(10) unsigned Number of bases that match that aren't repeats
misMatches 105int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 1int(10) unsigned Number of inserts in query
qBaseInsert 6int(10) unsigned Number of bases inserted in query
tNumInsert 4int(10) unsigned Number of inserts in target
tBaseInsert 4224int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JT416722varchar(255) Query sequence name
qSize 1626int(10) unsigned Query sequence size
qStart 86int(10) unsigned Alignment start position in query
qEnd 653int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 196202544int(10) unsigned Target sequence size
tStart 9915int(10) unsigned Alignment start position in target
tEnd 14700int(10) unsigned Alignment end position in target
blockCount 5int(10) unsigned Number of blocks in alignment
blockSizes 199,150,27,59,126,longblob Size of each block
qStarts 86,285,435,468,527,longblob Start of each block in query.
tStarts 196187844,196189283,1961913...longblob Start of each block in target.

Connected Tables and Joining Fields
        galGal5.all_est.qName (via xenoMrna.qName)
      galGal5.all_mrna.qName (via xenoMrna.qName)
      galGal5.refGene.name (via xenoMrna.qName)
      galGal5.refSeqAli.qName (via xenoMrna.qName)
      galGal5.xenoRefFlat.name (via xenoMrna.qName)
      galGal5.xenoRefGene.name (via xenoMrna.qName)
      galGal5.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585456105001644224+-JT416722162686653chr11962025449915147005199,150,27,59,126,86,285,435,468,527,196187844,196189283,196191321,196191351,196192503,
58547097000034221++LE174879996356923chr11962025449915147034119,96,150,202,356,475,571,721,9915,11127,13111,14501,
585505920015444266++JV163283207014192070chr11962025449915147785122,93,150,199,33,1419,1541,1634,1784,2037,9915,11130,13111,14501,14745,
585505920015444266++JV16328414207691420chr11962025449915147785122,93,150,199,33,769,891,984,1134,1387,9915,11130,13111,14501,14745,
58546511700196315262++JT48131717229541632chr11962025449915257594126,146,199,111,954,1176,1322,1521,9915,13115,14501,25648,
585387720017234290+-CR701179109172603chr11962025449917146664165,150,21,123,72,237,387,480,196187878,196189283,196191321,196192504,
585357640017244332+-CR6824959130493chr1196202544991714670582,86,109,21,123,0,82,168,277,370,196187874,196187957,196189324,196191321,196192504,
585399690017234290+-CR681952102398638chr11962025449917146754174,150,21,123,98,272,422,515,196187869,196189283,196191321,196192504,
585361840039944317+-CR681539114084628chr1196202544991714679521,55,94,152,123,84,112,168,262,505,196187865,196187892,196187949,196189283,196192504,
585397710027944294+-CR694864100662609chr1196202544991714679545,129,150,21,123,62,114,243,393,486,196187865,196187914,196189283,196191321,196192504,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.