Schema for xenoRefFlat
  Database: galGal5    Primary Table: xenoRefFlat    Row Count: 260,635   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName POMKvarchar(255) values Name of gene as it appears in genome browser.
name NM_001277971varchar(255) values Name of gene
chrom chr4varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 34420509int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 34421895int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 34420509int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 34421895int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned range Number of exons
exonStarts 34420509,34421172,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 34420629,34421895,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        galGal5.xenoMrna.qName (via xenoRefFlat.name)
      galGal5.xenoRefGene.name (via xenoRefFlat.name)
      galGal5.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
POMKNM_001277971chr4+34420509344218953442050934421895234420509,34421172,34420629,34421895,
SOX9NM_001009029chr14-577453657773455774536577734575774536,5774661,5774801,5774852,5775054,5776019,5777117,5774569,5774730,5774814,5774985,5775102,5776145,5777345,
SOX9NM_001009029chr18+886657188693278866571886932788866571,8867838,8868580,8868804,8868821,8868844,8868959,8869055,8867002,8868094,8868791,8868820,8868843,8868848,8868969,8869327,
MbpNM_001025258chr2+90869420908844489086953790884448690869420,90869582,90869623,90882100,90884376,90884418,90869567,90869618,90869710,90882184,90884409,90884448,
CPT1ANM_001081808chr5-166522371667352016652237166735112116652237,16653143,16653200,16654176,16655502,16656913,16657860,16659619,16659654,16659981,16661484,16663605,16663637,16665382,16 ...16652270,16653194,16653250,16654288,16655614,16657074,16657974,16659622,16659760,16660170,16661682,16663607,16663721,16665472,16 ...
CHMP4BNM_176812chr20-220000622179012200006221790142200006,2200526,2201420,2217743,2200138,2200641,2201584,2217901,
P2RY6NM_176798chr1+1954188551954197191954188551954197192195418855,195419497,195419452,195419719,
ZBTB10NM_001277145chr2+12154335412156362012154335412156104616121543354,121543828,121544081,121556182,121558433,121560741,121561112,121561931,121562641,121562683,121562906,121563051,12156311 ...121543807,121544056,121544101,121556341,121558602,121561046,121561181,121561946,121562668,121562728,121562922,121563072,12156320 ...
ACTR3NM_001277140chr7-297638392977578829764586297729241529763839,29763955,29764270,29764586,29765081,29765974,29765991,29766435,29767048,29767908,29769694,29770596,29772210,29772852,29 ...29763887,29764024,29764359,29764683,29765161,29765977,29766117,29766528,29767222,29768052,29769802,29770689,29772303,29772977,29 ...
LRRC31NM_001277127chr9+20002978200115502000297820010163720002978,20006060,20006870,20007774,20008652,20009996,20011253,20003053,20006231,20006999,20007933,20008818,20010163,20011550,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.