Schema for foldUtr5
  Database: hg16    Primary Table: foldUtr5    Row Count: 29,770   Data last updated: 2004-04-07
Format description: Info about folding of RNA into secondary structure
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000099varchar(255) values mRNA accession
seq CAGUCACGGGCCAGCCUUUCCCUUAAG...longblob   mRNA sequence (U's instead of T's)
fold .(((...((((((((((((((.....)...longblob   Parenthesis and .'s that describe folding
energy -18float range Estimated free energy of folding (negative)

Connected Tables and Joining Fields
        hg16.bioCycPathway.kgID (via foldUtr5.name)
      hg16.dmBlastTab.query (via foldUtr5.name)
      hg16.drBlastTab.query (via foldUtr5.name)
      hg16.dupSpMrna.mrnaID (via foldUtr5.name)
      hg16.foldUtr3.name (via foldUtr5.name)
      hg16.gnfAtlas2Distance.query (via foldUtr5.name)
      hg16.gnfAtlas2Distance.target (via foldUtr5.name)
      hg16.gnfU95Distance.query (via foldUtr5.name)
      hg16.gnfU95Distance.target (via foldUtr5.name)
      hg16.hg17Kg.name (via foldUtr5.name)
      hg16.keggPathway.kgID (via foldUtr5.name)
      hg16.kgAlias.kgID (via foldUtr5.name)
      hg16.kgProtAlias.kgID (via foldUtr5.name)
      hg16.kgXref.kgID (via foldUtr5.name)
      hg16.knownBlastTab.query (via foldUtr5.name)
      hg16.knownBlastTab.target (via foldUtr5.name)
      hg16.knownCanonical.transcript (via foldUtr5.name)
      hg16.knownGene.name (via foldUtr5.name)
      hg16.knownGeneLink.name (via foldUtr5.name)
      hg16.knownGeneMrna.name (via foldUtr5.name)
      hg16.knownGenePep.name (via foldUtr5.name)
      hg16.knownIsoforms.transcript (via foldUtr5.name)
      hg16.knownToEnsembl.name (via foldUtr5.name)
      hg16.knownToGnfAtlas2.name (via foldUtr5.name)
      hg16.knownToHInv.name (via foldUtr5.name)
      hg16.knownToLocusLink.name (via foldUtr5.name)
      hg16.knownToPfam.name (via foldUtr5.name)
      hg16.knownToRefSeq.name (via foldUtr5.name)
      hg16.knownToSuper.gene (via foldUtr5.name)
      hg16.knownToU133.name (via foldUtr5.name)
      hg16.knownToU95.name (via foldUtr5.name)
      hg16.scBlastTab.query (via foldUtr5.name)
      knownGeneV39.bioCycPathway.kgID (via foldUtr5.name)
      knownGeneV39.ceBlastTab.query (via foldUtr5.name)
      knownGeneV39.dmBlastTab.query (via foldUtr5.name)
      knownGeneV39.drBlastTab.query (via foldUtr5.name)
      knownGeneV39.foldUtr3.name (via foldUtr5.name)
      knownGeneV39.foldUtr5.name (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.query (via foldUtr5.name)
      knownGeneV39.gnfAtlas2Distance.target (via foldUtr5.name)
      knownGeneV39.kgAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgColor.kgID (via foldUtr5.name)
      knownGeneV39.kgProtAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgSpAlias.kgID (via foldUtr5.name)
      knownGeneV39.kgTargetAli.qName (via foldUtr5.name)
      knownGeneV39.kgXref.kgID (via foldUtr5.name)
      knownGeneV39.knownAttrs.kgID (via foldUtr5.name)
      knownGeneV39.knownBlastTab.query (via foldUtr5.name)
      knownGeneV39.knownBlastTab.target (via foldUtr5.name)
      knownGeneV39.knownCanonical.protein (via foldUtr5.name)
      knownGeneV39.knownCanonical.transcript (via foldUtr5.name)
      knownGeneV39.knownCds.name (via foldUtr5.name)
      knownGeneV39.knownGene.name (via foldUtr5.name)
      knownGeneV39.knownGeneMrna.name (via foldUtr5.name)
      knownGeneV39.knownGenePep.name (via foldUtr5.name)
      knownGeneV39.knownIsoforms.transcript (via foldUtr5.name)
      knownGeneV39.knownToEnsembl.name (via foldUtr5.name)
      knownGeneV39.knownToGnfAtlas2.name (via foldUtr5.name)
      knownGeneV39.knownToHprd.name (via foldUtr5.name)
      knownGeneV39.knownToLocusLink.name (via foldUtr5.name)
      knownGeneV39.knownToMrna.name (via foldUtr5.name)
      knownGeneV39.knownToMrnaSingle.name (via foldUtr5.name)
      knownGeneV39.knownToMupit.name (via foldUtr5.name)
      knownGeneV39.knownToPfam.name (via foldUtr5.name)
      knownGeneV39.knownToRefSeq.name (via foldUtr5.name)
      knownGeneV39.knownToSuper.gene (via foldUtr5.name)
      knownGeneV39.knownToTag.name (via foldUtr5.name)
      knownGeneV39.knownToU133.name (via foldUtr5.name)
      knownGeneV39.knownToU95.name (via foldUtr5.name)
      knownGeneV39.knownToVisiGene.name (via foldUtr5.name)
      knownGeneV39.knownToWikipedia.name (via foldUtr5.name)
      knownGeneV39.mmBlastTab.query (via foldUtr5.name)
      knownGeneV39.rnBlastTab.query (via foldUtr5.name)
      knownGeneV39.scBlastTab.query (via foldUtr5.name)
      knownGeneV39.ucscScop.ucscId (via foldUtr5.name)

Sample Rows
 
nameseqfoldenergy
AB000099CAGUCACGGGCCAGCCUUUCCCUUAAGGAUGUCUGAGAGCUGGUCUCCUCACUCUUUUCUUCCGCCUAUUAAACUUUCCGCUUCUUAACUCACCCAUGUGUGUCC.(((...((((((((((((((.....))).....))).))))))))....)))..................................((.(((....))).))..-18
AB000114AAGAAUUUAGGAAUUUCUGAUUCAUUUAAAGGAUUUACAAAUUCAUCAACCCCUGAAAACUAAAGCAAAUUGAACAGGAAAAAAAAAAAGAAG.............((((((.((((......(((((....))))).(((.....)))..............)))))))))).............-9.1
AB000115GAAGCCACAGAUCUCUUAAGAACUUUCUGUCUCCAAACCGUGGCUGCUCGAUAAAUCAGACAGAACAGUUAAUCCUCAAUUUAAGCCUGAUCUAACCCCUAGAAACAGAUAUAGAACAAUGGAAGUGA ......((...(((((.((((((((((((((((((......((.(....).)).......)))))))).)))).........))))))...))))).(((.(((..((((....((((...(((((...(( ...-50.32
AB000220GGACUGCGAAAGGAGCAGGGUUGCGGAGCUAGGGCUCCAGCCUGCGGCCGCGCAUUCUUGCGUCUGGCCAGCCGCGAGCUCUAAGGGUCGGCCCCGCCCGGUCCGCCCCCGCGGCUCCCUGCCAGGCU ....((.((.(((((..(((((.(...(((((....)))))).)))))(((((.........((((((.((((((((((.(((.....))).((((((((((.(..(((.(((((((...((.....)).. ...-262.6
AB000277UGCCCAAGACGGGUCUGGAGCCUGACUUCCGGGUGUCCAUGACCCUGGCGGCUGCUUCCGGUCCGCC..........((((((((((((((.....))))).)))).))))).((((((((....))).)))))-31.4
AB000449CCGAGUUACGAGUCGGCGAAAGCGGCGGGAAGUUCGUACUGGGCAGAACGCGACGGGUCUGCGGCUUAGGUGAAA((((.(....).))))...((((.(((((..((((((.((....)).))).)))...))))).))))........-22.1
AB000459CACAAUGACAUGCAGACCUGCAUAUUGGAGCUGGACGGAGAAACUGGGCUAAUGUGACAGACAGCAACAAGAGUAAGGCAGUUGCUUCGCUAUUGAGAGAAAGAACCAUAUGAAGAAAUUUCGGCAGA ....................(((((((((((..(..(.........)..).)))))))).))).((((..(((.((..((((....))))..)).)))...........(((((.......(((((((... ...-119.31
AB000460CACAAUGACAUGCAGACCUGCAUAUUGGAGCUGGACGGAGAAACUGGGCUAAUGUGACAGACAGCAACAAGAGUAAGGCAGUUGCUUCGCUAUUGAGAGAAAGAACCAUAUGAAGAAAUUUCGGCAGA ....................(((((((((((..(..(.........)..).)))))))).))).((((..(((.((..((((....))))..)).)))...........(((((.......(((((((... ...-119.31
AB000461CACAAUGACAUGCAGACCUGCAUAUUGGAGCUGGACGGAGAAACUGGGCUAAUGUGACAGACAGCAACAAGAGUAAGGCAGUUGCUUCGCUAUUGAGAGAAAGAACCAUAUGAAGAAAUUUCGGCAGA ....................(((((((((((..(..(.........)..).)))))))).))).((((..(((.((..((((....))))..)).)))...........(((((.......(((((((... ...-119.31
AB000462CAGCCGGGUGACCCAGGCCGAGGCCGGCAGAAGACAGCCUGAUGCCUUGAAGACUUCCUCUUGCACUUUUGUUGGAGGGUGCUGGUUUGCUAAAAGCAGAGAGUAUUUUUCUUUUUAUUUAUUUUGUU ....(((..((((.(((.((..(((((.(((........))).((.(((..((.((((((((((.(((....))).)))))).(((((...(((((((..(((((((........................ ...-81.59

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.