Schema for gnfAtlas2Distance
  Database: hg18    Primary Table: gnfAtlas2Distance    Row Count: 53,513,000   Data last updated: 2009-03-09
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query uc001azu.2varchar(255) Query gene. Indexed
target uc001azv.2varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      hg18.ccdsKgMap.geneId (via gnfAtlas2Distance.query)
      hg18.ceBlastTab.query (via gnfAtlas2Distance.query)
      hg18.dmBlastTab.query (via gnfAtlas2Distance.query)
      hg18.drBlastTab.query (via gnfAtlas2Distance.query)
      hg18.foldUtr3.name (via gnfAtlas2Distance.query)
      hg18.foldUtr5.name (via gnfAtlas2Distance.query)
      hg18.gnfU95Distance.query (via gnfAtlas2Distance.query)
      hg18.gnfU95Distance.target (via gnfAtlas2Distance.query)
      hg18.humanHprdP2P.query (via gnfAtlas2Distance.query)
      hg18.humanHprdP2P.target (via gnfAtlas2Distance.query)
      hg18.humanVidalP2P.query (via gnfAtlas2Distance.query)
      hg18.humanVidalP2P.target (via gnfAtlas2Distance.query)
      hg18.humanWankerP2P.query (via gnfAtlas2Distance.query)
      hg18.humanWankerP2P.target (via gnfAtlas2Distance.query)
      hg18.keggPathway.kgID (via gnfAtlas2Distance.query)
      hg18.kgAlias.kgID (via gnfAtlas2Distance.query)
      hg18.kgColor.kgID (via gnfAtlas2Distance.query)
      hg18.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      hg18.kgProtMap2.qName (via gnfAtlas2Distance.query)
      hg18.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      hg18.kgTargetAli.qName (via gnfAtlas2Distance.query)
      hg18.kgTxInfo.name (via gnfAtlas2Distance.query)
      hg18.kgXref.kgID (via gnfAtlas2Distance.query)
      hg18.knownBlastTab.query (via gnfAtlas2Distance.query)
      hg18.knownBlastTab.target (via gnfAtlas2Distance.query)
      hg18.knownCanonToDecipher.name (via gnfAtlas2Distance.query)
      hg18.knownCanonical.protein (via gnfAtlas2Distance.query)
      hg18.knownCanonical.transcript (via gnfAtlas2Distance.query)
      hg18.knownGene.name (via gnfAtlas2Distance.query)
      hg18.knownGeneMrna.name (via gnfAtlas2Distance.query)
      hg18.knownGenePep.name (via gnfAtlas2Distance.query)
      hg18.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      hg18.knownToAllenBrain.name (via gnfAtlas2Distance.query)
      hg18.knownToDecipher.name (via gnfAtlas2Distance.query)
      hg18.knownToEnsembl.name (via gnfAtlas2Distance.query)
      hg18.knownToGnf1h.name (via gnfAtlas2Distance.query)
      hg18.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      hg18.knownToHInv.name (via gnfAtlas2Distance.query)
      hg18.knownToHprd.name (via gnfAtlas2Distance.query)
      hg18.knownToKeggEntrez.name (via gnfAtlas2Distance.query)
      hg18.knownToLocusLink.name (via gnfAtlas2Distance.query)
      hg18.knownToMupit.name (via gnfAtlas2Distance.query)
      hg18.knownToPfam.name (via gnfAtlas2Distance.query)
      hg18.knownToRefSeq.name (via gnfAtlas2Distance.query)
      hg18.knownToSuper.gene (via gnfAtlas2Distance.query)
      hg18.knownToTreefam.name (via gnfAtlas2Distance.query)
      hg18.knownToU133.name (via gnfAtlas2Distance.query)
      hg18.knownToU133Plus2.name (via gnfAtlas2Distance.query)
      hg18.knownToU95.name (via gnfAtlas2Distance.query)
      hg18.knownToVisiGene.name (via gnfAtlas2Distance.query)
      hg18.mmBlastTab.query (via gnfAtlas2Distance.query)
      hg18.rnBlastTab.query (via gnfAtlas2Distance.query)
      hg18.scBlastTab.query (via gnfAtlas2Distance.query)
      hg18.ucscScop.ucscId (via gnfAtlas2Distance.query)
      knownGeneV39.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.ceBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.dmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.drBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr3.name (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr5.name (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gnfAtlas2Distance.query)
      knownGeneV39.kgAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgColor.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgTargetAli.qName (via gnfAtlas2Distance.query)
      knownGeneV39.kgXref.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownAttrs.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.target (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.protein (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownCds.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGeneMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGenePep.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownToEnsembl.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToHprd.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToLocusLink.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrnaSingle.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMupit.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToPfam.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToRefSeq.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToSuper.gene (via gnfAtlas2Distance.query)
      knownGeneV39.knownToTag.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU133.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU95.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToVisiGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToWikipedia.name (via gnfAtlas2Distance.query)
      knownGeneV39.mmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.rnBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.scBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.ucscScop.ucscId (via gnfAtlas2Distance.query)

Sample Rows
 
querytargetdistance
uc001azu.2uc001azv.20
uc001azu.2uc001azu.20
uc001azu.2uc009voz.10
uc001azu.2uc001azt.20
uc001azu.2uc003otj.10.531696
uc001azu.2uc003oti.10.531696
uc001azu.2uc010jyd.10.531696
uc001azu.2uc003oth.10.531696
uc001azu.2uc003otg.10.531696
uc001azu.2uc002bal.10.532177

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.