Schema for gnfU95Distance
  Database: hg18    Primary Table: gnfU95Distance    Row Count: 28,685,000   Data last updated: 2009-03-09
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query uc003esc.1varchar(255) Query gene. Indexed
target uc003esf.1varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via gnfU95Distance.query)
      hg18.ccdsKgMap.geneId (via gnfU95Distance.query)
      hg18.ceBlastTab.query (via gnfU95Distance.query)
      hg18.dmBlastTab.query (via gnfU95Distance.query)
      hg18.drBlastTab.query (via gnfU95Distance.query)
      hg18.foldUtr3.name (via gnfU95Distance.query)
      hg18.foldUtr5.name (via gnfU95Distance.query)
      hg18.gnfAtlas2Distance.query (via gnfU95Distance.query)
      hg18.gnfAtlas2Distance.target (via gnfU95Distance.query)
      hg18.humanHprdP2P.query (via gnfU95Distance.query)
      hg18.humanHprdP2P.target (via gnfU95Distance.query)
      hg18.humanVidalP2P.query (via gnfU95Distance.query)
      hg18.humanVidalP2P.target (via gnfU95Distance.query)
      hg18.humanWankerP2P.query (via gnfU95Distance.query)
      hg18.humanWankerP2P.target (via gnfU95Distance.query)
      hg18.keggPathway.kgID (via gnfU95Distance.query)
      hg18.kgAlias.kgID (via gnfU95Distance.query)
      hg18.kgColor.kgID (via gnfU95Distance.query)
      hg18.kgProtAlias.kgID (via gnfU95Distance.query)
      hg18.kgProtMap2.qName (via gnfU95Distance.query)
      hg18.kgSpAlias.kgID (via gnfU95Distance.query)
      hg18.kgTargetAli.qName (via gnfU95Distance.query)
      hg18.kgTxInfo.name (via gnfU95Distance.query)
      hg18.kgXref.kgID (via gnfU95Distance.query)
      hg18.knownBlastTab.query (via gnfU95Distance.query)
      hg18.knownBlastTab.target (via gnfU95Distance.query)
      hg18.knownCanonToDecipher.name (via gnfU95Distance.query)
      hg18.knownCanonical.protein (via gnfU95Distance.query)
      hg18.knownCanonical.transcript (via gnfU95Distance.query)
      hg18.knownGene.name (via gnfU95Distance.query)
      hg18.knownGeneMrna.name (via gnfU95Distance.query)
      hg18.knownGenePep.name (via gnfU95Distance.query)
      hg18.knownIsoforms.transcript (via gnfU95Distance.query)
      hg18.knownToAllenBrain.name (via gnfU95Distance.query)
      hg18.knownToDecipher.name (via gnfU95Distance.query)
      hg18.knownToEnsembl.name (via gnfU95Distance.query)
      hg18.knownToGnf1h.name (via gnfU95Distance.query)
      hg18.knownToGnfAtlas2.name (via gnfU95Distance.query)
      hg18.knownToHInv.name (via gnfU95Distance.query)
      hg18.knownToHprd.name (via gnfU95Distance.query)
      hg18.knownToKeggEntrez.name (via gnfU95Distance.query)
      hg18.knownToLocusLink.name (via gnfU95Distance.query)
      hg18.knownToMupit.name (via gnfU95Distance.query)
      hg18.knownToPfam.name (via gnfU95Distance.query)
      hg18.knownToRefSeq.name (via gnfU95Distance.query)
      hg18.knownToSuper.gene (via gnfU95Distance.query)
      hg18.knownToTreefam.name (via gnfU95Distance.query)
      hg18.knownToU133.name (via gnfU95Distance.query)
      hg18.knownToU133Plus2.name (via gnfU95Distance.query)
      hg18.knownToU95.name (via gnfU95Distance.query)
      hg18.knownToVisiGene.name (via gnfU95Distance.query)
      hg18.mmBlastTab.query (via gnfU95Distance.query)
      hg18.rnBlastTab.query (via gnfU95Distance.query)
      hg18.scBlastTab.query (via gnfU95Distance.query)
      hg18.ucscScop.ucscId (via gnfU95Distance.query)
      knownGeneV39.bioCycPathway.kgID (via gnfU95Distance.query)
      knownGeneV39.ceBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.dmBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.drBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.foldUtr3.name (via gnfU95Distance.query)
      knownGeneV39.foldUtr5.name (via gnfU95Distance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gnfU95Distance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gnfU95Distance.query)
      knownGeneV39.kgAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgColor.kgID (via gnfU95Distance.query)
      knownGeneV39.kgProtAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgSpAlias.kgID (via gnfU95Distance.query)
      knownGeneV39.kgTargetAli.qName (via gnfU95Distance.query)
      knownGeneV39.kgXref.kgID (via gnfU95Distance.query)
      knownGeneV39.knownAttrs.kgID (via gnfU95Distance.query)
      knownGeneV39.knownBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.knownBlastTab.target (via gnfU95Distance.query)
      knownGeneV39.knownCanonical.protein (via gnfU95Distance.query)
      knownGeneV39.knownCanonical.transcript (via gnfU95Distance.query)
      knownGeneV39.knownCds.name (via gnfU95Distance.query)
      knownGeneV39.knownGene.name (via gnfU95Distance.query)
      knownGeneV39.knownGeneMrna.name (via gnfU95Distance.query)
      knownGeneV39.knownGenePep.name (via gnfU95Distance.query)
      knownGeneV39.knownIsoforms.transcript (via gnfU95Distance.query)
      knownGeneV39.knownToEnsembl.name (via gnfU95Distance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gnfU95Distance.query)
      knownGeneV39.knownToHprd.name (via gnfU95Distance.query)
      knownGeneV39.knownToLocusLink.name (via gnfU95Distance.query)
      knownGeneV39.knownToMrna.name (via gnfU95Distance.query)
      knownGeneV39.knownToMrnaSingle.name (via gnfU95Distance.query)
      knownGeneV39.knownToMupit.name (via gnfU95Distance.query)
      knownGeneV39.knownToPfam.name (via gnfU95Distance.query)
      knownGeneV39.knownToRefSeq.name (via gnfU95Distance.query)
      knownGeneV39.knownToSuper.gene (via gnfU95Distance.query)
      knownGeneV39.knownToTag.name (via gnfU95Distance.query)
      knownGeneV39.knownToU133.name (via gnfU95Distance.query)
      knownGeneV39.knownToU95.name (via gnfU95Distance.query)
      knownGeneV39.knownToVisiGene.name (via gnfU95Distance.query)
      knownGeneV39.knownToWikipedia.name (via gnfU95Distance.query)
      knownGeneV39.mmBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.rnBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.scBlastTab.query (via gnfU95Distance.query)
      knownGeneV39.ucscScop.ucscId (via gnfU95Distance.query)

Sample Rows
 
querytargetdistance
uc003esc.1uc003esf.10
uc003esc.1uc003esc.10
uc003esc.1uc003esb.10
uc003esc.1uc003esa.10
uc003esc.1uc010ezx.10.74534
uc003esc.1uc002rpn.10.74534
uc003esc.1uc010fxx.10.794277
uc003esc.1uc002vsf.10.794277
uc003esc.1uc002vse.10.794277
uc003esc.1uc001kcz.10.809213

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.