Schema for xenoMrna
  Database: hg18    Primary Table: xenoMrna    Row Count: 4,633,802   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 1113int(10) unsigned Number of bases that match that aren't repeats
misMatches 145int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 3int(10) unsigned Number of inserts in query
qBaseInsert 175int(10) unsigned Number of bases inserted in query
tNumInsert 9int(10) unsigned Number of inserts in target
tBaseInsert 8956int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK236494varchar(255) Query sequence name
qSize 1597int(10) unsigned Query sequence size
qStart 26int(10) unsigned Alignment start position in query
qEnd 1459int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 247249719int(10) unsigned Target sequence size
tStart 4543int(10) unsigned Alignment start position in target
tEnd 14757int(10) unsigned Alignment end position in target
blockCount 12int(10) unsigned Number of blocks in alignment
blockSizes 151,118,147,137,136,198,46,...longblob Size of each block
qStarts 26,177,295,442,579,715,1081...longblob Start of each block in query.
tStarts 247234962,247241471,2472417...longblob Start of each block in target.

Connected Tables and Joining Fields
        hg18.all_est.qName (via xenoMrna.qName)
      hg18.all_mrna.qName (via xenoMrna.qName)
      hg18.refGene.name (via xenoMrna.qName)
      hg18.refSeqAli.qName (via xenoMrna.qName)
      hg18.xenoEst.qName (via xenoMrna.qName)
      hg18.xenoRefFlat.name (via xenoMrna.qName)
      hg18.xenoRefGene.name (via xenoMrna.qName)
      hg18.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585111314500317598956+-AK2364941597261459chr124724971945431475712151,118,147,137,136,198,46,110,72,5,90,48,26,177,295,442,579,715,1081,1128,1238,1310,1321,1411,247234962,247241471,247241795,247242114,247242488,247242801,247243905,247243951,247244818,247245030,247245035,247245128,
585110215500317088945+-BC15326119521901617chr124724971945551475711157,112,147,137,131,208,49,110,67,10,129,190,347,459,606,743,874,1245,1295,1405,1472,1488,247234962,247241477,247241795,247242114,247242488,247242796,247243902,247243951,247244818,247245025,247245035,
58555711300319471984+-BC10188813001865chr124724971945587212954,59,5,192,48,109,72,11,120,1,55,114,119,496,547,656,728,745,247242507,247242564,247242679,247242805,247243902,247243952,247244818,247245030,247245041,
585785298005309109072+-BC0852012053801472chr124724971945581471311113,112,75,47,145,132,141,30,109,71,108,80,193,305,401,448,593,731,878,1148,1257,1364,247235006,247241477,247241795,247241891,247242110,247242492,247242807,247242951,247243952,247244818,247245053,
58578631800428899051+-BC1230232051601452chr124724971945581471310113,112,143,145,132,141,30,109,71,108,60,173,285,428,573,711,858,1128,1237,1344,247235006,247241477,247241795,247242110,247242492,247242807,247242951,247243952,247244818,247245053,
58578631800428899051+-CR8554192084921484chr124724971945581471310113,112,143,145,132,141,30,109,71,108,92,205,317,460,605,743,890,1160,1269,1376,247235006,247241477,247241795,247242110,247242492,247242807,247242951,247243952,247244818,247245053,
58571825300644899193+-BC13494117581111530chr124724971945581472210123,149,141,132,138,27,109,71,57,24,111,343,492,633,771,921,1200,1309,1437,1506,247234997,247241793,247242114,247242492,247242807,247242951,247243952,247244818,247245065,247245137,
585920271004246129006+-AJ7201782066221459chr124724971945581475513155,115,144,141,132,144,42,11,4,109,72,23,99,22,177,292,436,577,709,862,1084,1095,1129,1238,1310,1360,247234964,247241477,247241798,247242114,247242492,247242801,247242951,247243908,247243920,247243952,247244818,247245030,24724506 ...
585103717900321998982+-AK0336161764791514chr124724971945581475611156,112,147,141,69,60,195,49,110,72,105,79,235,347,494,635,704,764,1145,1195,1305,1409,247234963,247241477,247241795,247242114,247242492,247242564,247242801,247243902,247243951,247244818,247245056,
585103717900321998982+-AK1544001833871522chr124724971945581475611156,112,147,141,69,60,195,49,110,72,105,87,243,355,502,643,712,772,1153,1203,1313,1417,247234963,247241477,247241795,247242114,247242492,247242564,247242801,247243902,247243951,247244818,247245056,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.