Schema for xenoRefFlat
  Database: hg18    Primary Table: xenoRefFlat    Row Count: 172,638   Data last updated: 2020-08-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName stxbp1avarchar(255) values Name of gene as it appears in genome browser.
name NM_001025182varchar(255) values Name of gene
chrom chr9varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 129453704int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 129484650int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 129453704int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 129484650int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 19int(10) unsigned range Number of exons
exonStarts 129453704,129453776,1294558...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 129453752,129453779,1294558...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hg18.xenoMrna.qName (via xenoRefFlat.name)
      hg18.xenoRefGene.name (via xenoRefFlat.name)
      hg18.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
stxbp1aNM_001025182chr9+12945370412948465012945370412948465019129453704,129453776,129455817,129455962,129460474,129462129,129463201,129465307,129467346,129468265,129470179,129471997,12947415 ...129453752,129453779,129455894,129455964,129460542,129462208,129463308,129465453,129467431,129468396,129470287,129472058,12947421 ...
LOC500959NM_001033072chr12+684698868498116846991684980876846988,6848288,6848523,6848682,6849112,6849473,6849691,6847106,6848412,6848608,6848815,6849198,6849563,6849811,
PSMD14NM_001076067chr2+16187321316197647416188358216197615712161873213,161881253,161883578,161932234,161932540,161934863,161935928,161950220,161955860,161959834,161973593,161976058,161873252,161881326,161883630,161932306,161932660,161934934,161936079,161950328,161955935,161959960,161973656,161976474,
ptpn4.SNM_001091402chr2+12028388012045126812028389912045109229120283880,120336581,120351368,120351460,120351511,120355831,120356144,120356550,120359838,120374763,120389224,120394114,12040064 ...120284037,120336689,120351408,120351465,120351588,120355878,120356182,120356667,120359928,120374852,120389288,120394287,12040071 ...
Gm9839NM_001199956chr3+1868179611868268751868179611868268753186817961,186819778,186826779,186818091,186819987,186826875,
Phc3NM_001165956chr3-17128807517138221917129771117138219731171288075,171288152,171288204,171288370,171288653,171288732,171289240,171289707,171294538,171295862,171297219,171297370,17129770 ...171288117,171288168,171288287,171288605,171288680,171288758,171289354,171289746,171294559,171296048,171297338,171297563,17129786 ...
Sstr4NM_009219chr20+22964062229652882296412022965287222964062,22964258,22964156,22965288,
lin28aNM_001015806chr1+26610549266254462661054926625446326610549,26624373,26625319,26610653,26624565,26625446,
LHBNM_001365021chr19-54211080542190515421113654219040354211080,54218504,54219025,54211379,54218672,54219051,
Mir759NR_030436chr13+52282179522822755228227552282275152282179,52282275,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.