Schema for all_est
  Database: melGal5    Primary Table: all_est    Row Count: 19,615   Data last updated: 2017-01-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1019smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 334int(10) unsigned range Number of bases that match that aren't repeats
misMatches 11int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 4int(10) unsigned range Number of inserts in query
qBaseInsert 6int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 4int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AF062413varchar(255) values Query sequence name
qSize 377int(10) unsigned range Query sequence size
qStart 18int(10) unsigned range Alignment start position in query
qEnd 369int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 190651702int(10) unsigned range Target sequence size
tStart 56922591int(10) unsigned range Alignment start position in target
tEnd 56922940int(10) unsigned range Alignment end position in target
blockCount 7int(10) unsigned range Number of blocks in alignment
blockSizes 154,105,4,17,10,37,18,longblob   Size of each block
qStarts 18,172,278,285,303,314,351,longblob   Start of each block in query.
tStarts 56922591,56922746,56922851,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      melGal5.all_mrna.qName (via all_est.qName)
      melGal5.estOrientInfo.name (via all_est.qName)
      melGal5.intronEst.qName (via all_est.qName)
      melGal5.refGene.name (via all_est.qName)
      melGal5.refSeqAli.qName (via all_est.qName)
      melGal5.xenoRefGene.name (via all_est.qName)
      melGal5.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
101933411004634+AF06241337718369chr119065170256922591569229407154,105,4,17,10,37,18,18,172,278,285,303,314,351,56922591,56922746,56922851,56922857,56922874,56922884,56922922,
15363032021350628-AF0624163890357chr1190651702124659564124659899147,13,12,7,5,9,10,7,4,9,17,74,55,78,32,41,80,94,102,109,121,132,140,149,159,180,255,311,124659564,124659572,124659605,124659617,124659624,124659630,124659640,124659650,124659657,124659664,124659673,124659692,12465976 ...
6182351028934+AF0624153081248chr1219584067435767143579131112,98,24,10,15,13,11,6,8,28,13,1,13,112,137,148,164,178,190,197,205,235,4357671,4357685,4357783,4357807,4357817,4357832,4357845,4357856,4357862,4357871,4357900,
7303690010011+AF06241439211381chr1419532596190673921906776325,365,11,16,19067392,19067398,
6052500000000+AF0624082500250chr255601919266940026696501250,0,2669400,
5962570001100-AF0624072580258chr470658698149584214960992248,9,0,249,1495842,1496090,
8022608020000-AF0624112733273chr47065869828514870285151401270,0,28514870,
10531234011817-AF062410267108244chr4706586986145556261455697244,84,23,75,61455562,61455613,
9212011001200+AF06241228315219chr5590064404407273044072932261,141,15,78,44072730,44072791,
728630000000+AF062412283220283chr7362872381886492818864991163,220,18864928,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.