Schema for intronEst
  Database: melGal5    Primary Table: intronEst    Row Count: 11,731   Data last updated: 2017-01-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 625smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 392int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 3736int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AI138158varchar(255) values Query sequence name
qSize 393int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 393int(10) unsigned range Alignment end position in query
tName chr3varchar(255) values Target sequence name
tSize 93210757int(10) unsigned range Target sequence size
tStart 5357427int(10) unsigned range Alignment start position in target
tEnd 5361556int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 41,182,108,62,longblob   Size of each block
qStarts 0,41,223,331,longblob   Start of each block in query.
tStarts 5357427,5359053,5360046,536...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      melGal5.all_est.qName (via intronEst.qName)
      melGal5.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6253921000033736+AI1381583930393chr39321075753574275361556441,182,108,62,0,41,223,331,5357427,5359053,5360046,5361494,
12942981041132424-AI1381593040304chr3932107579298613592988862418,26,152,107,0,19,45,197,92986135,92986186,92987635,92988755,
661299200331288+BI335693652198502chr119065170210027823100284125124,92,16,7,62,198,322,415,432,440,10027823,10028235,10028327,10028343,10028350,
99047526003343783+BI33564362775615chr11906517025318444953188769866,141,88,89,77,36,10,30,75,141,282,370,459,537,574,585,53184449,53185838,53186616,53187268,53188616,53188693,53188729,53188739,
1304441626322872888+BI3356605881505chr119065170294357709943610739111,145,99,8,42,13,8,46,4,1,112,257,356,391,433,446,454,501,94357709,94360365,94360821,94360921,94360957,94361000,94361014,94361023,94361069,
157439102701143828+BI3356734330419chr11906517021297383361297425826112,126,113,35,10,22,0,112,238,351,387,397,129738336,129739153,129741868,129742514,129742549,129742560,
2027420200003650+BI3356884510422chr1190651702189094240189095312410,223,149,40,0,10,233,382,189094240,189094345,189095122,189095272,
20274392002249941+BI3357075880465chr119065170218909712518909850710135,169,14,38,36,16,8,5,7,13,0,135,304,318,356,392,412,440,445,452,189097125,189097346,189097516,189097531,189098393,189098430,189098451,189098480,189098486,189098494,
2034253258025084257-BI335653650208571chr1190651702190045010190049580911,24,7,44,22,34,8,106,57,79,93,117,124,168,190,224,279,385,190045010,190045027,190045052,190045060,190046000,190046023,190046058,190048265,190049523,
61049381243372099-BI33564663254574chr1029209805334047933430951014,54,34,21,21,32,19,135,116,71,58,72,126,161,183,204,237,256,391,507,3340479,3340494,3340549,3340585,3340606,3340628,3340660,3341276,3342810,3343024,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.