Schema for knownBlastTab
  Database: mm9    Primary Table: knownBlastTab    Row Count: 5,752,342   Data last updated: 2011-04-19
Format description: Blast alignments to other proteins from this species.
On download server: MariaDB table dump directory
fieldexampleSQL type description
query uc007aeu.1varchar(255) Name of sequence in this assembly (query)
target uc007aeu.1varchar(255) Name of sequence in other assembly (target)
identity 100float Percent identity
aliLength 647int(10) unsigned Length of alignment
mismatch 0int(10) unsigned Number of mismatches
gapOpen 0int(10) unsigned Number of gap openings
qStart 0int(10) unsigned Start in query (0 based)
qEnd 647int(10) unsigned End in query (non-inclusive)
tStart 0int(10) unsigned Start in target (0 based)
tEnd 647int(10) unsigned End in target (non-inclusive)
eValue 0double Expectation value
bitScore 1104double Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via knownBlastTab.query)
      knownGeneV39.ceBlastTab.query (via knownBlastTab.query)
      knownGeneV39.dmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.drBlastTab.query (via knownBlastTab.query)
      knownGeneV39.foldUtr3.name (via knownBlastTab.query)
      knownGeneV39.foldUtr5.name (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via knownBlastTab.query)
      knownGeneV39.kgAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgColor.kgID (via knownBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via knownBlastTab.query)
      knownGeneV39.kgXref.kgID (via knownBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.query (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.target (via knownBlastTab.query)
      knownGeneV39.knownCanonical.protein (via knownBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via knownBlastTab.query)
      knownGeneV39.knownCds.name (via knownBlastTab.query)
      knownGeneV39.knownGene.name (via knownBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via knownBlastTab.query)
      knownGeneV39.knownGenePep.name (via knownBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via knownBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via knownBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via knownBlastTab.query)
      knownGeneV39.knownToHprd.name (via knownBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via knownBlastTab.query)
      knownGeneV39.knownToMrna.name (via knownBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via knownBlastTab.query)
      knownGeneV39.knownToMupit.name (via knownBlastTab.query)
      knownGeneV39.knownToPfam.name (via knownBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via knownBlastTab.query)
      knownGeneV39.knownToSuper.gene (via knownBlastTab.query)
      knownGeneV39.knownToTag.name (via knownBlastTab.query)
      knownGeneV39.knownToU133.name (via knownBlastTab.query)
      knownGeneV39.knownToU95.name (via knownBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via knownBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via knownBlastTab.query)
      knownGeneV39.mmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.rnBlastTab.query (via knownBlastTab.query)
      knownGeneV39.scBlastTab.query (via knownBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via knownBlastTab.query)
      mm9.affyGnfU74ADistance.query (via knownBlastTab.query)
      mm9.affyGnfU74ADistance.target (via knownBlastTab.query)
      mm9.affyGnfU74BDistance.query (via knownBlastTab.query)
      mm9.affyGnfU74BDistance.target (via knownBlastTab.query)
      mm9.affyGnfU74CDistance.query (via knownBlastTab.query)
      mm9.affyGnfU74CDistance.target (via knownBlastTab.query)
      mm9.bioCycPathway.kgID (via knownBlastTab.query)
      mm9.ccdsKgMap.geneId (via knownBlastTab.query)
      mm9.ceBlastTab.query (via knownBlastTab.query)
      mm9.dmBlastTab.query (via knownBlastTab.query)
      mm9.drBlastTab.query (via knownBlastTab.query)
      mm9.foldUtr3.name (via knownBlastTab.query)
      mm9.foldUtr5.name (via knownBlastTab.query)
      mm9.gnfAtlas2Distance.query (via knownBlastTab.query)
      mm9.gnfAtlas2Distance.target (via knownBlastTab.query)
      mm9.hgBlastTab.query (via knownBlastTab.query)
      mm9.keggPathway.kgID (via knownBlastTab.query)
      mm9.kgAlias.kgID (via knownBlastTab.query)
      mm9.kgColor.kgID (via knownBlastTab.query)
      mm9.kgProtAlias.kgID (via knownBlastTab.query)
      mm9.kgProtMap2.qName (via knownBlastTab.query)
      mm9.kgSpAlias.kgID (via knownBlastTab.query)
      mm9.kgTargetAli.qName (via knownBlastTab.query)
      mm9.kgTxInfo.name (via knownBlastTab.query)
      mm9.kgXref.kgID (via knownBlastTab.query)
      mm9.knownCanonical.protein (via knownBlastTab.query)
      mm9.knownCanonical.transcript (via knownBlastTab.query)
      mm9.knownGene.name (via knownBlastTab.query)
      mm9.knownGeneMrna.name (via knownBlastTab.query)
      mm9.knownGenePep.name (via knownBlastTab.query)
      mm9.knownIsoforms.transcript (via knownBlastTab.query)
      mm9.knownToAllenBrain.name (via knownBlastTab.query)
      mm9.knownToEnsembl.name (via knownBlastTab.query)
      mm9.knownToGnfAtlas2.name (via knownBlastTab.query)
      mm9.knownToKeggEntrez.name (via knownBlastTab.query)
      mm9.knownToLocusLink.name (via knownBlastTab.query)
      mm9.knownToPfam.name (via knownBlastTab.query)
      mm9.knownToRefSeq.name (via knownBlastTab.query)
      mm9.knownToSuper.gene (via knownBlastTab.query)
      mm9.knownToVisiGene.name (via knownBlastTab.query)
      mm9.rnBlastTab.query (via knownBlastTab.query)
      mm9.scBlastTab.query (via knownBlastTab.query)
      mm9.ucscScop.ucscId (via knownBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc007aeu.1uc007aeu.1100647000647064701104
uc007aeu.1uc008nha.150.545542409103647505807e-137485
uc007aeu.1uc007uhu.249.1754524061086471246381e-136484
uc007aeu.1uc008vbr.128.343071826253550853648e-25113
uc007aeu.1uc009kzx.227.662821895249528663366e-22103
uc007aeu.1uc007aiv.126.972671873254513793461e-2099
uc007aeu.1uc009kzw.227.88165113236552891700.00000000000000480.9
uc007aeu.1uc009spq.126.233218411251525673960.00000000000000780.1
uc007aew.1uc007aew.110028500028502857e-154540
uc007aew.1uc007aex.2100265001027502655e-141497

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.