Schema for knownGenePep
  Database: mm9    Primary Table: knownGenePep    Row Count: 43,689   Data last updated: 2011-03-02
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name uc007aeu.1varchar(255) values Name of gene
seq MAAKSDGRLKMKKSSDVAFTPLQNSDN...longblob   mRNA sequence

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via knownGenePep.name)
      knownGeneV39.ceBlastTab.query (via knownGenePep.name)
      knownGeneV39.dmBlastTab.query (via knownGenePep.name)
      knownGeneV39.drBlastTab.query (via knownGenePep.name)
      knownGeneV39.foldUtr3.name (via knownGenePep.name)
      knownGeneV39.foldUtr5.name (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGenePep.name)
      knownGeneV39.kgAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgColor.kgID (via knownGenePep.name)
      knownGeneV39.kgProtAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgSpAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgTargetAli.qName (via knownGenePep.name)
      knownGeneV39.kgXref.kgID (via knownGenePep.name)
      knownGeneV39.knownAttrs.kgID (via knownGenePep.name)
      knownGeneV39.knownBlastTab.query (via knownGenePep.name)
      knownGeneV39.knownBlastTab.target (via knownGenePep.name)
      knownGeneV39.knownCanonical.protein (via knownGenePep.name)
      knownGeneV39.knownCanonical.transcript (via knownGenePep.name)
      knownGeneV39.knownCds.name (via knownGenePep.name)
      knownGeneV39.knownGene.name (via knownGenePep.name)
      knownGeneV39.knownGeneMrna.name (via knownGenePep.name)
      knownGeneV39.knownGenePep.name (via knownGenePep.name)
      knownGeneV39.knownIsoforms.transcript (via knownGenePep.name)
      knownGeneV39.knownToEnsembl.name (via knownGenePep.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGenePep.name)
      knownGeneV39.knownToHprd.name (via knownGenePep.name)
      knownGeneV39.knownToLocusLink.name (via knownGenePep.name)
      knownGeneV39.knownToMrna.name (via knownGenePep.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGenePep.name)
      knownGeneV39.knownToMupit.name (via knownGenePep.name)
      knownGeneV39.knownToPfam.name (via knownGenePep.name)
      knownGeneV39.knownToRefSeq.name (via knownGenePep.name)
      knownGeneV39.knownToSuper.gene (via knownGenePep.name)
      knownGeneV39.knownToTag.name (via knownGenePep.name)
      knownGeneV39.knownToU133.name (via knownGenePep.name)
      knownGeneV39.knownToU95.name (via knownGenePep.name)
      knownGeneV39.knownToVisiGene.name (via knownGenePep.name)
      knownGeneV39.knownToWikipedia.name (via knownGenePep.name)
      knownGeneV39.mmBlastTab.query (via knownGenePep.name)
      knownGeneV39.rnBlastTab.query (via knownGenePep.name)
      knownGeneV39.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.ucscScop.ucscId (via knownGenePep.name)
      mm9.affyGnfU74ADistance.query (via knownGenePep.name)
      mm9.affyGnfU74ADistance.target (via knownGenePep.name)
      mm9.affyGnfU74BDistance.query (via knownGenePep.name)
      mm9.affyGnfU74BDistance.target (via knownGenePep.name)
      mm9.affyGnfU74CDistance.query (via knownGenePep.name)
      mm9.affyGnfU74CDistance.target (via knownGenePep.name)
      mm9.bioCycPathway.kgID (via knownGenePep.name)
      mm9.ccdsKgMap.geneId (via knownGenePep.name)
      mm9.ceBlastTab.query (via knownGenePep.name)
      mm9.dmBlastTab.query (via knownGenePep.name)
      mm9.drBlastTab.query (via knownGenePep.name)
      mm9.foldUtr3.name (via knownGenePep.name)
      mm9.foldUtr5.name (via knownGenePep.name)
      mm9.gnfAtlas2Distance.query (via knownGenePep.name)
      mm9.gnfAtlas2Distance.target (via knownGenePep.name)
      mm9.hgBlastTab.query (via knownGenePep.name)
      mm9.keggPathway.kgID (via knownGenePep.name)
      mm9.kgAlias.kgID (via knownGenePep.name)
      mm9.kgColor.kgID (via knownGenePep.name)
      mm9.kgProtAlias.kgID (via knownGenePep.name)
      mm9.kgProtMap2.qName (via knownGenePep.name)
      mm9.kgSpAlias.kgID (via knownGenePep.name)
      mm9.kgTargetAli.qName (via knownGenePep.name)
      mm9.kgTxInfo.name (via knownGenePep.name)
      mm9.kgXref.kgID (via knownGenePep.name)
      mm9.knownBlastTab.query (via knownGenePep.name)
      mm9.knownBlastTab.target (via knownGenePep.name)
      mm9.knownCanonical.protein (via knownGenePep.name)
      mm9.knownCanonical.transcript (via knownGenePep.name)
      mm9.knownGene.name (via knownGenePep.name)
      mm9.knownGeneMrna.name (via knownGenePep.name)
      mm9.knownIsoforms.transcript (via knownGenePep.name)
      mm9.knownToAllenBrain.name (via knownGenePep.name)
      mm9.knownToEnsembl.name (via knownGenePep.name)
      mm9.knownToGnfAtlas2.name (via knownGenePep.name)
      mm9.knownToKeggEntrez.name (via knownGenePep.name)
      mm9.knownToLocusLink.name (via knownGenePep.name)
      mm9.knownToPfam.name (via knownGenePep.name)
      mm9.knownToRefSeq.name (via knownGenePep.name)
      mm9.knownToSuper.gene (via knownGenePep.name)
      mm9.knownToVisiGene.name (via knownGenePep.name)
      mm9.rnBlastTab.query (via knownGenePep.name)
      mm9.scBlastTab.query (via knownGenePep.name)
      mm9.ucscScop.ucscId (via knownGenePep.name)

Sample Rows
 
nameseq
uc007aeu.1MAAKSDGRLKMKKSSDVAFTPLQNSDNSGSVQGLAPGLPSGSGAEDTEAAGGGCCPDGGGCSRCCCCCAGSGGSAGSGGSGGGGRGSGAGSAALCLRLGREQRRYSLWDCLWILAAVAVYFADVGTDI ...
uc007aew.1MLEKLQVSPKMSDTPSTSFSMIHLTSEGQVPSPRHSNITHPVVAKRISFYKSGDPQFGGVRVVVNPRSFKTFDALLDSLSRKVPLPFGVRNISTPRGRHSITRLEELEDGKSYVCSHNKKVLPVDLDK ...
uc007aex.2MSDTPSTSFSMIHLTSEGQVPSPRHSNITHPVVAKRISFYKSGDPQFGGVRVVVNPRSFKTFDALLDSLSRKVPLPFGVRNISTPRGRHSITRLEELEDGKSYVCSHNKKVLPVDLDKARRRPRPWLS ...
uc007aey.1MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSPLGDVKVKGEVVASSGAPAGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH ...
uc007aez.1MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSPLGDVKVKGEVVASSGAPAGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH ...
uc007afa.1MSPHGYNEQHLQTSEFQPSYFPKRSWRQRPAPASFPQGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALVEPQAGALGPEGGRVAMDGLGLPFPEPGYPAGPP ...
uc007afb.1MQDHPNYKYRPRRRKQVKRMKRVEGGFLHALVEPQAGALGPEGGRVAMDGLGLPFPEPGYPAGPPLMSPHMGPHYRDCQGLGAPALDGYPLPTPDTSPLDGVEQDPAFFAAPLPGDCPAAGTYTYAPV ...
uc007afc.1MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSPLGDVKVKGEVVASSGAPAGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH ...
uc007aff.2MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQLVNGRGVTI ...
uc007afd.2MAGTARGCGTSLDLLRSLPRVSLANLKPSPNSRKRERRPRDRRRGRKCGRGHKGERQRGTRPRLGFEGGQTPFYIRIPKYGFNEGHSFRHQYQPLSLRRLQYLIDLGRVDPTQPIDLTQLVNGRGVTI ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.