Schema for all_est
  Database: panTro1    Primary Table: all_est    Row Count: 19,062   Data last updated: 2016-04-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 631smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 664int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 12512int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AU298520varchar(255) values Query sequence name
qSize 666int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 666int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 229575298int(10) unsigned range Target sequence size
tStart 6110978int(10) unsigned range Alignment start position in target
tEnd 6124155int(10) unsigned range Alignment end position in target
blockCount 7int(10) unsigned range Number of blocks in alignment
blockSizes 93,289,19,125,81,24,34,longblob   Size of each block
qStarts 0,93,382,401,526,608,632,longblob   Start of each block in query.
tStarts 6110978,6111072,6111362,611...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)
      panTro1.all_mrna.qName (via all_est.qName)
      panTro1.est.qName (via all_est.qName)
      panTro1.estOrientInfo.name (via all_est.qName)
      panTro1.intronEst.qName (via all_est.qName)
      panTro1.refGene.name (via all_est.qName)
      panTro1.refSeqAli.qName (via all_est.qName)
      panTro1.xenoMrna.qName (via all_est.qName)
      panTro1.xenoRefGene.name (via all_est.qName)
      panTro1.xenoRefSeqAli.qName (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
63166410011512512-AU2985206660666chr122957529861109786124155793,289,19,125,81,24,34,0,93,382,401,526,608,632,6110978,6111072,6111362,6117473,6122211,6122292,6124121,
63157000022210705-AU29773460634606chr122957529861110406122315516,325,125,81,23,0,17,342,467,549,6111040,6111056,6117473,6122211,6122292,
63152400100210705-AU29840055328553chr1229575298611108761223173294,125,106,0,294,419,6111087,6117473,6122211,
63144230322412511-AU2968544500450chr122957529861111956124154753,133,125,80,21,3,33,0,54,187,312,392,414,417,6111195,6111248,6117473,6122211,6122292,6122313,6124121,
6526070000057948-AU298587716106713chr1229575298886778888763436152,134,70,59,96,96,3,155,289,359,418,514,8867788,8868555,8869410,8871887,8873329,8876247,
6525080000057948-AU297919617109617chr122957529888678878876343653,134,70,59,96,96,0,53,187,257,316,412,8867887,8868555,8869410,8871887,8873329,8876247,
6524560000047333-AU297857583105561chr1229575298886855488763435135,70,59,96,96,22,157,227,286,382,8868554,8869410,8871887,8873329,8876247,
65235000011047343-AU297593470110470chr122957529888686508876343539,70,59,98,84,0,39,109,168,276,8868650,8869410,8871887,8873329,8876259,
6522841001136648-AU297247403107393chr122957529888694108876343471,22,96,96,10,82,104,200,8869410,8871924,8873329,8876247,
652228001221324216-AU297542400111364chr122957529888718878876343447,81,16,96,36,95,177,193,8871887,8873328,8873409,8876247,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.