Schema for xenoRefFlat
  Database: panTro1    Primary Table: xenoRefFlat    Row Count: 508,887   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName TNPO2varchar(255) Name of gene as it appears in genome browser.
name NR_167977varchar(255) Name of gene
chrom chr20varchar(255) Reference sequence chromosome or scaffold
strand -char(1) + or - for strand
txStart 13205814int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 13232784int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 13232784int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 13232784int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 29int(10) unsigned Number of exons
exonStarts 13205814,13206094,13206291,...longblob Exon start positions (or end positions for minus strand item)
exonEnds 13206045,13206270,13206812,...longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      panTro1.xenoMrna.qName (via xenoRefFlat.name)
      panTro1.xenoRefGene.name (via xenoRefFlat.name)
      panTro1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
TNPO2NR_167977chr20-132058141323278413232784132327842913205814,13206094,13206291,13206821,13207949,13208221,13208375,13208695,13209451,13210073,13210359,13211892,13212144,13212334,13 ...13206045,13206270,13206812,13207867,13208077,13208296,13208475,13208771,13209547,13210172,13210447,13212051,13212252,13212421,13 ...
LINC00366NR_046999chr14+37436546374392583743925837439258337436546,37438554,37439152,37436593,37438660,37439258,
OR2AG2NM_001194398chr9+690754969085726907585690853616907549,6908572,
PRAMENM_001077979chr1+13263755133540831326378213354083313263755,13264454,13353990,13263992,13264478,13354083,
timm17bNM_001113593chrX-49842511498464534984251149846453549842511,49842707,49843648,49845462,49846427,49842621,49842836,49843713,49845561,49846453,
Ttc39aos1NR_131195chr1+49719252497230034972300349723003249719252,49722949,49719352,49723003,
Ttc39aos1NR_131195chr5_random-52876629528773435287734352877343552876629,52877073,52877164,52877200,52877319,52876644,52877104,52877177,52877224,52877343,
XACTNR_131204chrX-1165084911165104951165104951165104952116508491,116510392,116508628,116510495,
UCHL5NR_131183chr1-17229370317233686317233686317233686312172293703,172293882,172298612,172300455,172305621,172306715,172306924,172307069,172327335,172329350,172336190,172336805,172293721,172293932,172298711,172300569,172305685,172306846,172306987,172307194,172327441,172329415,172336195,172336863,
KinNM_025280chr8-7939461797163979395587971632147939461,7943364,7945936,7947220,7949292,7949538,7952672,7952703,7959225,7962456,7963674,7963879,7966782,7971518,7939621,7943465,7946037,7947274,7949295,7949586,7952675,7952835,7959273,7962641,7963794,7963923,7966877,7971639,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.