Schema for all_mrna
  Database: ponAbe2    Primary Table: all_mrna    Row Count: 5,379   Data last updated: 2019-09-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 3092int(10) unsigned range Number of bases that match that aren't repeats
misMatches 18int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 6int(10) unsigned range Number of inserts in target
tBaseInsert 12237int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName CR859251varchar(255) values Query sequence name
qSize 3246int(10) unsigned range Query sequence size
qStart 1int(10) unsigned range Alignment start position in query
qEnd 3111int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 229942017int(10) unsigned range Target sequence size
tStart 146852int(10) unsigned range Alignment start position in target
tEnd 162199int(10) unsigned range Alignment end position in target
blockCount 7int(10) unsigned range Number of blocks in alignment
blockSizes 41,614,63,129,162,174,1927,longblob   Size of each block
qStarts 1,42,656,719,848,1010,1184,longblob   Start of each block in query.
tStarts 146852,147236,155664,155886...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      ponAbe2.all_est.qName (via all_mrna.qName)
      ponAbe2.mrnaOrientInfo.name (via all_mrna.qName)
      ponAbe2.refGene.name (via all_mrna.qName)
      ponAbe2.refSeqAli.qName (via all_mrna.qName)
      ponAbe2.xenoMrna.qName (via all_mrna.qName)
      ponAbe2.xenoRefGene.name (via all_mrna.qName)
      ponAbe2.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5863092180000612237+CR859251324613111chr1229942017146852162199741,614,63,129,162,174,1927,1,42,656,719,848,1010,1184,146852,147236,155664,155886,158074,159512,160272,
6021863300001148936-CR8609331899171883chr12299420172272846232364812646,82,112,57,120,118,131,50,130,81,113,226,16,662,744,856,913,1033,1151,1282,1332,1462,1543,1656,2272846,2274548,2276056,2285176,2285327,2286259,2286987,2304032,2307898,2312249,2320425,2323422,
762436821170007158977-CR858467457814562chr12299420174006050416958882337,1822,67,43,80,73,85,54,16,2353,4175,4242,4285,4365,4438,4523,4006050,4008388,4055561,4055764,4057057,4081386,4118271,4169534,
773702448025323502-CR8614023826503809chr12299420174437581446483761787,1256,401,142,94,74,17,1808,3065,3466,3608,3702,4437581,4439368,4440624,4459449,4462140,4464763,
6431654200001456626-CR859824167301656chr12299420177666499772478115335,59,102,83,58,148,122,72,166,88,49,90,98,70,116,17,352,411,513,596,654,802,924,996,1162,1250,1299,1389,1487,1557,7666499,7668292,7668441,7669726,7671820,7687882,7689916,7691484,7694171,7695751,7701142,7706133,7707393,7708171,7724665,
6441696291000920354+CR858731180201789chr12299420177737386775952910164,135,111,177,183,166,204,128,154,367,0,164,299,410,587,770,936,1140,1268,1422,7737386,7739881,7743477,7745139,7748408,7751017,7752925,7754600,7756569,7759162,
103438531011005534566-CR859367359213575chr1229942017942043299584726922,1995,130,53,109,265,17,939,2934,3164,3217,3326,9420432,9421355,9508647,9713508,9794977,9958207,
673215850012934636-CR859738231802165chr1229942017115711071160790611596,142,672,52,101,65,157,135,147,61,35,153,749,893,1565,1617,1718,1783,1940,2075,2222,2283,11571107,11571705,11571847,11573478,11574411,11578818,11586999,11597028,11599764,11604103,11607871,
1037261111380002059365-CR859882488804875chr12299420171252082212585062212208,113,193,201,197,156,76,99,82,121,68,101,108,153,90,141,117,180,154,186,131,13,2221,2334,2527,2728,2925,3081,3157,3256,3338,3459,3527,3628,3736,3889,3979,4120,4237,4417,4571,4757,12520822,12523459,12525032,12526007,12531133,12533126,12536063,12537211,12541946,12547995,12549017,12559966,12561176,12562245,12 ...
691119312475042316106498+CR860657191101911chr12299420171389447414002652881,112,109,1097,75,47,32,127,0,81,193,302,1400,1686,1744,1784,13894474,13949557,13966013,14000769,14001866,14002421,14002480,14002525,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.