Schema for xenoMrna
  Database: ponAbe2    Primary Table: xenoMrna    Row Count: 7,514,362   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 845int(10) unsigned Number of bases that match that aren't repeats
misMatches 46int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 6int(10) unsigned Number of inserts in query
qBaseInsert 2033int(10) unsigned Number of bases inserted in query
tNumInsert 4int(10) unsigned Number of inserts in target
tBaseInsert 15343int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK127000varchar(255) Query sequence name
qSize 4077int(10) unsigned Query sequence size
qStart 21int(10) unsigned Alignment start position in query
qEnd 2945int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 229942017int(10) unsigned Target sequence size
tStart 14706int(10) unsigned Alignment start position in target
tEnd 30940int(10) unsigned Alignment end position in target
blockCount 8int(10) unsigned Number of blocks in alignment
blockSizes 48,46,26,206,20,30,294,221,longblob Size of each block
qStarts 21,74,121,148,355,375,406,2...longblob Start of each block in query.
tStarts 229911077,229911125,2299111...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      ponAbe2.all_est.qName (via xenoMrna.qName)
      ponAbe2.all_mrna.qName (via xenoMrna.qName)
      ponAbe2.refGene.name (via xenoMrna.qName)
      ponAbe2.refSeqAli.qName (via xenoMrna.qName)
      ponAbe2.xenoRefFlat.name (via xenoMrna.qName)
      ponAbe2.xenoRefGene.name (via xenoMrna.qName)
      ponAbe2.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585845460062033415343+-AK1270004077212945chr12299420171470630940848,46,26,206,20,30,294,221,21,74,121,148,355,375,406,2724,229911077,229911125,229911171,229923261,229923467,229923490,229923522,229927090,
58511325800103252716234+-BC05277950492714713chr122994201714706321301215,51,44,26,201,20,30,294,41,82,165,221,271,317,373,418,484,686,706,737,3103,3256,3340,4492,229909887,229911076,229911127,229911171,229923266,229923467,229923490,229923522,229925754,229925907,229925989,229927090,
58511425300103213716229+-BC06493857181544562chr122994201714706321301215,51,44,26,206,20,30,294,41,82,165,221,154,200,256,301,328,535,555,586,2952,3105,3189,4341,229909887,229911076,229911127,229911171,229923261,229923467,229923490,229923522,229925754,229925907,229925989,229927090,
58552534001111+-AK2930951052181741chr122994201718201187613116,93,350,181,297,391,229923256,229923373,229923466,
58552831001111+-BC000596969165725chr122994201718201187613210,320,29,165,376,696,229923256,229923466,229923787,
585605330037212067+-BC0654801006344989chr12299420171823530940548,72,205,193,120,344,397,470,676,869,229911077,229911125,229923261,229923466,229923662,
58534422001100+-HQ44860846548415chr12299420171826718633282,284,48,131,229923384,229923466,
58522316000000++CU688071140417256chr122994201718268185071239,17,18268,
5851094100152193+-AK324091711265467chr122994201718308185512114,36,265,431,229923466,229923673,
58527319001100+-CU688070125514307chr12299420171834118633282,210,14,97,229923384,229923466,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.