Schema for all_mrna
  Database: ponAbe3    Primary Table: all_mrna    Row Count: 5,387   Data last updated: 2018-10-02
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1731int(10) unsigned range Number of bases that match that aren't repeats
misMatches 7int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 7int(10) unsigned range Number of inserts in target
tBaseInsert 5938int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName CR858616varchar(255) values Query sequence name
qSize 1753int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 1738int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 227913704int(10) unsigned range Target sequence size
tStart 67049int(10) unsigned range Alignment start position in target
tEnd 74725int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 405,49,90,389,79,115,100,511,longblob   Size of each block
qStarts 0,405,454,544,933,1012,1127...longblob   Start of each block in query.
tStarts 67049,68138,68316,68747,692...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      ponAbe3.all_est.qName (via all_mrna.qName)
      ponAbe3.mrnaOrientInfo.name (via all_mrna.qName)
      ponAbe3.refGene.name (via all_mrna.qName)
      ponAbe3.refSeqAli.qName (via all_mrna.qName)
      ponAbe3.xenoRefGene.name (via all_mrna.qName)
      ponAbe3.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58517317000075938+CR858616175301738chr122791370467049747258405,49,90,389,79,115,100,511,0,405,454,544,933,1012,1127,1227,67049,68138,68316,68747,69235,70668,73950,74214,
5853092180000612102+CR859251324613111chr122791370497657112869741,614,63,129,162,174,1927,1,42,656,719,848,1010,1184,97657,98041,106467,106689,108748,110183,110942,
6021858800001147148-CR8609331899171883chr12279137042285969233498312646,82,112,57,120,118,131,50,130,81,113,226,16,662,744,856,913,1033,1151,1282,1332,1462,1543,1656,2285969,2287671,2289178,2297160,2297311,2298245,2298971,2315743,2319605,2323884,2332059,2334757,
764552800117156130-CR858467457814562chr12279137044014022417471292337,1561,260,67,43,80,73,85,54,16,2353,3915,4175,4242,4285,4365,4438,4523,4014022,4016360,4017921,4063344,4063547,4064840,4088536,4124529,4174658,
77380130025457077-CR861402382603809chr12279137044440096450097771787,1256,401,142,94,73,51,17,1808,3065,3466,3608,3702,3775,4440096,4441883,4443139,4461856,4464547,4467170,4500926,
6421654200001456045-CR859824167301656chr12279137047537030759473115335,59,102,83,58,148,122,72,166,88,49,90,98,70,116,17,352,411,513,596,654,802,924,996,1162,1250,1299,1389,1487,1557,7537030,7538823,7538972,7540257,7542351,7558420,7560454,7562022,7564709,7566289,7571401,7576080,7577340,7578122,7594615,
643178720000920355+CR858731180201789chr12279137047607337762948110164,135,111,177,183,166,204,128,154,367,0,164,299,410,587,770,936,1140,1268,1422,7607337,7609832,7613428,7615090,7618359,7620968,7622877,7624552,7626521,7629114,
103566600125517087-CR859367359213575chr1227913704923729297579517920,1995,127,103,53,109,265,17,939,2934,3061,3164,3217,3326,9237292,9238212,9320938,9471485,9517977,9598334,9757686,
672215840013932416-CR859738231802165chr1227913704114886271152320511596,142,671,52,101,65,157,135,147,61,35,153,749,894,1565,1617,1718,1783,1940,2075,2222,2283,11488627,11489225,11489367,11491006,11491939,11494158,11502289,11512322,11515058,11519401,11523170,
8448601500002059536-CR859882488804875chr12279137041242353012487941212208,113,193,201,197,156,76,99,82,121,68,101,108,153,90,141,117,180,154,186,131,13,2221,2334,2527,2728,2925,3081,3157,3256,3338,3459,3527,3628,3736,3889,3979,4120,4237,4417,4571,4757,12423530,12426167,12427737,12428712,12434261,12436255,12439192,12440340,12444725,12450773,12451795,12462744,12463955,12465024,12 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.