Schema for dmBlastTab
  Database: rn3    Primary Table: dmBlastTab    Row Count: 5,927   Data last updated: 2006-01-31
Format description: Blast alignments of Drosophila genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB000098varchar(255) values Name of sequence in this assembly (query)
target CG14692-RAvarchar(255) values Name of sequence in other assembly (target)
identity 21.16float range Percent identity
aliLength 293int(10) unsigned range Length of alignment
mismatch 189int(10) unsigned range Number of mismatches
gapOpen 9int(10) unsigned range Number of gap openings
qStart 156int(10) unsigned range Start in query (0 based)
qEnd 428int(10) unsigned range End in query (non-inclusive)
tStart 1128int(10) unsigned range Start in target (0 based)
tEnd 1400int(10) unsigned range End in target (non-inclusive)
eValue 0.00001double range Expectation value
bitScore 48.1double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via dmBlastTab.query)
      knownGeneV39.ceBlastTab.query (via dmBlastTab.query)
      knownGeneV39.dmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.drBlastTab.query (via dmBlastTab.query)
      knownGeneV39.foldUtr3.name (via dmBlastTab.query)
      knownGeneV39.foldUtr5.name (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via dmBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via dmBlastTab.query)
      knownGeneV39.kgAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgColor.kgID (via dmBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via dmBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via dmBlastTab.query)
      knownGeneV39.kgXref.kgID (via dmBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.query (via dmBlastTab.query)
      knownGeneV39.knownBlastTab.target (via dmBlastTab.query)
      knownGeneV39.knownCanonical.protein (via dmBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via dmBlastTab.query)
      knownGeneV39.knownCds.name (via dmBlastTab.query)
      knownGeneV39.knownGene.name (via dmBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via dmBlastTab.query)
      knownGeneV39.knownGenePep.name (via dmBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via dmBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via dmBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via dmBlastTab.query)
      knownGeneV39.knownToHprd.name (via dmBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via dmBlastTab.query)
      knownGeneV39.knownToMrna.name (via dmBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via dmBlastTab.query)
      knownGeneV39.knownToMupit.name (via dmBlastTab.query)
      knownGeneV39.knownToPfam.name (via dmBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via dmBlastTab.query)
      knownGeneV39.knownToSuper.gene (via dmBlastTab.query)
      knownGeneV39.knownToTag.name (via dmBlastTab.query)
      knownGeneV39.knownToU133.name (via dmBlastTab.query)
      knownGeneV39.knownToU95.name (via dmBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via dmBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via dmBlastTab.query)
      knownGeneV39.mmBlastTab.query (via dmBlastTab.query)
      knownGeneV39.rnBlastTab.query (via dmBlastTab.query)
      knownGeneV39.scBlastTab.query (via dmBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via dmBlastTab.query)
      rn3.drBlastTab.query (via dmBlastTab.query)
      rn3.dupSpMrna.mrnaID (via dmBlastTab.query)
      rn3.gnfAtlas2Distance.query (via dmBlastTab.query)
      rn3.gnfAtlas2Distance.target (via dmBlastTab.query)
      rn3.hgBlastTab.query (via dmBlastTab.query)
      rn3.keggPathway.kgID (via dmBlastTab.query)
      rn3.kgAlias.kgID (via dmBlastTab.query)
      rn3.kgProtAlias.kgID (via dmBlastTab.query)
      rn3.kgSpAlias.kgID (via dmBlastTab.query)
      rn3.kgXref.kgID (via dmBlastTab.query)
      rn3.knownBlastTab.query (via dmBlastTab.query)
      rn3.knownBlastTab.target (via dmBlastTab.query)
      rn3.knownCanonical.transcript (via dmBlastTab.query)
      rn3.knownGene.name (via dmBlastTab.query)
      rn3.knownGeneLink.name (via dmBlastTab.query)
      rn3.knownGeneMrna.name (via dmBlastTab.query)
      rn3.knownGenePep.name (via dmBlastTab.query)
      rn3.knownIsoforms.transcript (via dmBlastTab.query)
      rn3.knownToEnsembl.name (via dmBlastTab.query)
      rn3.knownToGnfAtlas2.name (via dmBlastTab.query)
      rn3.knownToLocusLink.name (via dmBlastTab.query)
      rn3.knownToPfam.name (via dmBlastTab.query)
      rn3.knownToRefSeq.name (via dmBlastTab.query)
      rn3.knownToSuper.gene (via dmBlastTab.query)
      rn3.scBlastTab.query (via dmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000098CG14692-RA21.162931899156428112814000.0000148.1
AB000113CG11128-RB54.024351794143634173.0000000000000002e-123439
AB000199CG7724-RA26.5527514471023072790.00000000260.1
AB000215CG11138-RC281258031923123634830.000244.7
AB000216CG33291-RA36.331002498186398132312692e-156550
AB000280CG2930-RD20.7119810951713482394100.0000000655.8
AB000362CG32169-RA447541127725990.0000000000000573.6
AB000489CG7628-RA42.17683324142567386557.000000000000001e-134474
AB000491CG1489-RA93400271740654050676
AB000507CG17664-RB25.52239147721256242360.000000000000272.8

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.