Schema for all_est
  Database: ailMel1    Primary Table: all_est    Row Count: 2   Data last updated: 2018-04-23
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 604smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 346int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 1int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AF325534varchar(255) values Query sequence name
qSize 374int(10) unsigned range Query sequence size
qStart 14int(10) unsigned range Alignment start position in query
qEnd 361int(10) unsigned range Alignment end position in query
tName GL192437.1varchar(255) values Target sequence name
tSize 2818556int(10) unsigned range Target sequence size
tStart 2583395int(10) unsigned range Alignment start position in target
tEnd 2583743int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 152,195,longblob   Size of each block
qStarts 13,165,longblob   Start of each block in query.
tStarts 2583395,2583548,longblob   Start of each block in target.

Connected Tables and Joining Fields
        ailMel1.all_mrna.qName (via all_est.qName)
      ailMel1.estOrientInfo.name (via all_est.qName)
      ailMel1.xenoMrna.qName (via all_est.qName)
      ailMel1.xenoRefGene.name (via all_est.qName)
      ailMel1.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6043461000011-AF32553437414361GL192437.12818556258339525837432152,195,13,165,2583395,2583548,
588561400001176-AF3257095720565GL192735.115305024251344258752558,7,7,565,425134,425868,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.