Schema for xenoMrna
  Database: ailMel1    Primary Table: xenoMrna    Row Count: 7,690,679   Data last updated: 2020-08-17
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 217int(10) unsigned Number of bases that match that aren't repeats
misMatches 30int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 5int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 3int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JU316195varchar(255) Query sequence name
qSize 326int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 252int(10) unsigned Alignment end position in query
tName GL192338.1varchar(255) Target sequence name
tSize 6047896int(10) unsigned Target sequence size
tStart 0int(10) unsigned Alignment start position in target
tEnd 250int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 157,48,42,longblob Size of each block
qStarts 0,160,210,longblob Start of each block in query.
tStarts 6047646,6047803,6047854,longblob Start of each block in target.

Connected Tables and Joining Fields
        ailMel1.all_est.qName (via xenoMrna.qName)
      ailMel1.all_mrna.qName (via xenoMrna.qName)
      ailMel1.xenoRefFlat.name (via xenoMrna.qName)
      ailMel1.xenoRefGene.name (via xenoMrna.qName)
      ailMel1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58521730002513+-JU3161953260252GL192338.1604789602503157,48,42,0,160,210,6047646,6047803,6047854,
5851171930012174134++JO437412127481274GL192338.1604789647575873365,129,1070,8,73,204,475,74674,74803,
58516963080042315126999++AK0344462263182253GL192338.16047896477129480764,87,656,717,48,332,100,18,206,360,1053,1773,1821,2153,477,74673,74825,75530,76247,118198,129380,
73298145200523416148924++AK0395623684163683GL192338.160478964771528341864,87,656,717,48,332,112,147,69,54,118,87,138,122,244,177,147,114,16,205,359,1052,1772,1820,2152,2264,2411,2480,2536,2654,2741,2879,3001,3245,3422,3569,477,74673,74825,75530,76247,118198,129380,133173,134214,134368,135080,138896,139187,143451,147070,151156,152453,152720,
739106130802526106265204886++DQ127229115171611517GL192338.160478964772158026864,87,656,717,48,332,112,147,69,54,118,87,138,122,244,177,147,253,207,200,168,180,111,199,198,161,87,106,118,58,43,2,218,203,707 ...16,205,359,1052,1772,1820,2152,2264,2411,2480,2536,2654,2741,2879,3001,3245,3422,3569,3822,4029,4229,4397,4577,4688,4887,5085,52 ...477,74673,74825,75530,76247,118198,129380,133173,134214,134368,135080,138896,139187,143451,147070,151156,152453,152720,154101,15 ...
73105027000025101867204042++JT678227122311112231GL192338.160478964882157327652,129,1086,405,33,333,113,58,147,70,55,118,87,138,122,250,177,145,260,212,196,169,187,112,197,200,161,94,104,120,3,58,44,224,20 ...11,63,194,1982,2387,2420,2754,2869,2927,3074,3144,3199,3317,3404,3542,3664,3914,4091,4236,4496,4708,4904,5073,5260,5372,5569,576 ...488,74674,74803,75892,117034,118198,129379,130206,133173,134214,134369,135080,138896,139187,143451,147070,151156,152452,152715,1 ...
731948159002256130598++AB1718882173252157GL192338.16047896489133194851,131,608,739,113,332,112,21,25,76,231,839,1579,1692,2024,2136,489,74674,74829,75443,76182,118198,129380,133173,
585181413200124116044++BC022889198041952GL192338.16047896495118485645,129,25,608,852,287,4,49,180,205,813,1665,495,74674,74803,74829,75443,118198,
7310399730001423161204084++AY64715711360011360GL192338.160478964952157086745,129,25,608,852,332,112,147,70,55,118,87,138,122,244,177,147,253,211,196,168,180,111,199,198,160,88,106,118,58,43,220,203,707, ...0,45,176,201,809,1661,1993,2105,2252,2322,2377,2495,2582,2720,2842,3086,3263,3410,3663,3874,4070,4238,4418,4529,4728,4926,5086,5 ...495,74674,74803,74829,75443,118198,129380,133173,134214,134369,135080,138896,139187,143451,147070,151156,152453,152720,154101,15 ...
5851235860012274137++JO596148132521325GL192338.1604789650175959439,129,1086,67,2,41,172,1258,501,74674,74803,75892,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.