Schema for xenoRefFlat
  Database: bosTau9    Primary Table: xenoRefFlat    Row Count: 213,526   Data last updated: 2019-05-21
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName EPCAMvarchar(255) values Name of gene as it appears in genome browser.
name NM_001040029varchar(255) values Name of gene
chrom chr11varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 29782977int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 29793029int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 29782977int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 29793029int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 9int(10) unsigned range Number of exons
exonStarts 29782977,29785481,29785865,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 29783013,29785587,29786105,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        bosTau9.xenoRefGene.name (via xenoRefFlat.name)
      bosTau9.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
EPCAMNM_001040029chr11+29782977297930292978297729793029929782977,29785481,29785865,29786945,29788047,29789281,29790232,29792253,29792987,29783013,29785587,29786105,29787006,29788110,29789383,29790433,29792298,29793029,
Olfr1156NM_146817chr1+6892217000596892217000595689221,699204,699409,699747,699846,689261,699405,699712,699846,700059,
Olfr1155NM_146643chr1+7031487040817031487040814703148,703198,703424,703853,703198,703423,703830,704081,
erlin1NM_001016892chr26-210548772109405421054877210940541221054877,21056306,21056397,21057358,21067604,21070770,21079260,21081341,21085032,21086510,21091580,21094010,21054982,21056309,21056477,21057448,21067696,21070829,21079334,21081467,21085094,21086561,21091658,21094054,
Olfr1158NM_146645chr1+7150107159307150107159302715010,715393,715393,715930,
SPIRE2NM_032451chr18+146523771467914314652404146786881614652377,14652473,14659581,14663595,14667065,14667720,14667915,14668122,14668969,14672457,14672691,14677420,14678139,14678467,14 ...14652422,14652602,14659599,14663956,14667237,14667804,14668030,14668301,14669143,14672602,14672759,14677448,14678257,14678694,14 ...
Slc45a2NM_053077chr20+39789968398279553978996839827933739789968,39792146,39810745,39815253,39816066,39824242,39827726,39790320,39792323,39811014,39815407,39816190,39824445,39827955,
Rtn3NM_053076chr29+420512334211724942051391421152371442051233,42051291,42109719,42111733,42112724,42113249,42114080,42115191,42115355,42115628,42116032,42116066,42117087,42117204,42051279,42051536,42109928,42111871,42112794,42113296,42114139,42115341,42115445,42115691,42116056,42116225,42117105,42117249,
Ophn1NM_052976chrX+819792688260317681980097826012212981979268,81979368,81979567,81980093,82159092,82179725,82202011,82295572,82306659,82312460,82314532,82317154,82334946,82339536,82 ...81979357,81979404,81979594,81980250,82159186,82179789,82202083,82295674,82306769,82312566,82314662,82317255,82335038,82339615,82 ...
RCAN1NM_203417chr1+8829841002238994531100062413882984,883091,994378,997108,1000451,1000672,1000702,1001089,1001326,1001532,1001588,1001701,1002105,883022,883112,994552,997268,1000636,1000687,1000979,1001220,1001489,1001558,1001678,1002016,1002238,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.