Schema for mrnaOrientInfo
  Database: ce2    Primary Table: mrnaOrientInfo    Row Count: 61,142   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 675smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrVvarchar(255) values Reference sequence chromosome or scaffold
chromStart 11865704int(10) unsigned range Start position in chromosome
chromEnd 11867501int(10) unsigned range End position in chromosome
name NM_073586varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        ce2.all_mrna.qName (via mrnaOrientInfo.name)
      ce2.refFlat.name (via mrnaOrientInfo.name)
      ce2.refGene.name (via mrnaOrientInfo.name)
      ce2.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
675chrV1186570411867501NM_07358630000
681chrIII1263179612634800NR_16736200000
585chrI4373244676NM_05826441000
653chrI90275719028224NM_00113630030000
585chrI7185781071AB0968751100220
636chrIII67224756725656NM_066074100000
639chrIV72039847205284NM_068738400180
650chrIII85249948526415NM_001306745220150
649chrIII83901298390278NR_05251700000
648chrII83382218338334NR_05143500000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.