Schema for refGene
  Database: ce2    Primary Table: refGene    Row Count: 51,856   Data last updated: 2020-08-21
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name NM_078282varchar(255) values Name of gene
chrom chrXvarchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 16558346int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 16562490int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 16558356int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 16562222int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 9int(10) unsigned range Number of exons
exonStarts 16558346,16559155,16559297,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 16558588,16559254,16559440,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        ce2.all_est.qName (via refGene.name)
      ce2.all_mrna.qName (via refGene.name)
      ce2.mrnaOrientInfo.name (via refGene.name)
      ce2.refFlat.name (via refGene.name)
      ce2.refSeqAli.qName (via refGene.name)
      ce2.xenoRefGene.name (via refGene.name)
      ce2.xenoRefSeqAli.qName (via refGene.name)
      hgFixed.gbCdnaInfo.acc (via refGene.name)
      hgFixed.gbMiscDiff.acc (via refGene.name)
      hgFixed.gbSeq.acc (via refGene.name)
      hgFixed.gbWarn.acc (via refGene.name)
      hgFixed.imageClone.acc (via refGene.name)
      hgFixed.refLink.mrnaAcc (via refGene.name)
      hgFixed.refSeqStatus.mrnaAcc (via refGene.name)
      hgFixed.refSeqSummary.mrnaAcc (via refGene.name)
      knownGeneV39.kgXref.refseq (via refGene.name)
      knownGeneV39.knownToRefSeq.value (via refGene.name)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
NM_078282chrX+16558346165624901655835616562222916558346,16559155,16559297,16560087,16560750,16560906,16561200,16561311,16561982,16558588,16559254,16559440,16560159,16560858,16560987,16561248,16561410,16562490,
NR_167317chrX+16519394165215031652150316521503116519394,16521503,
NM_078279chrX+16536749165401221653680216539459616536749,16537602,16537914,16538239,16538816,16539084,16536896,16537853,16538037,16538634,16538991,16540122,
NM_078280chrX+165405861655112416541331165510592516540586,16541725,16541922,16542090,16542801,16542927,16543046,16543484,16543655,16544516,16544895,16545180,16546034,16546336,16 ...16541370,16541869,16542035,16542196,16542881,16543003,16543258,16543608,16544154,16544851,16545132,16545471,16546289,16546442,16 ...
NM_078148chrX-15425015154281701542519015428007915425015,15425338,15425526,15425704,15425830,15426936,15427295,15427639,15427902,15425290,15425479,15425654,15425772,15425945,15427193,15427592,15427781,15428170,
NM_078149chrX-15429835154311151542992715431032415429835,15430678,15430796,15430921,15430069,15430743,15430859,15431115,
NM_078151chrX-154355741544071115435600154407111215435574,15435829,15435999,15437050,15437271,15437544,15438362,15439280,15439499,15439688,15439884,15440556,15435690,15435937,15436115,15437223,15437496,15437798,15438682,15439454,15439643,15439836,15440107,15440711,
NM_001029651chrX+15441645154435471544166715443410515441645,15441860,15442224,15442752,15443195,15441780,15442171,15442542,15443121,15443547,
NM_001029652chrX+15441717154434101544171815443410515441717,15441860,15442224,15442752,15443195,15441780,15442171,15442542,15443121,15443410,
NM_078154chrX+154662171547072015466264154704741015466217,15466629,15467521,15467773,15467917,15468309,15468932,15469166,15469790,15470334,15466330,15466840,15467715,15467873,15468261,15468455,15469118,15469242,15469911,15470720,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.