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Database: dm2 Primary Table: all_est Row Count: 943,555 Data last updated: 2016-05-25
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | description |
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| bin | 609 | smallint(5) unsigned | Indexing field to speed chromosome range queries. |
| matches | 503 | int(10) unsigned | Number of bases that match that aren't repeats |
| misMatches | 4 | int(10) unsigned | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | Number of bases that match but are part of repeats |
| nCount | 1 | int(10) unsigned | Number of 'N' bases |
| qNumInsert | 1 | int(10) unsigned | Number of inserts in query |
| qBaseInsert | 1 | int(10) unsigned | Number of bases inserted in query |
| tNumInsert | 1 | int(10) unsigned | Number of inserts in target |
| tBaseInsert | 1 | int(10) unsigned | Number of bases inserted in target |
| strand | - | char(2) | + or - for strand. First character query, second target (optional) |
| qName | EC267120 | varchar(255) | Query sequence name |
| qSize | 516 | int(10) unsigned | Query sequence size |
| qStart | 7 | int(10) unsigned | Alignment start position in query |
| qEnd | 516 | int(10) unsigned | Alignment end position in query |
| tName | chr2L | varchar(255) | Target sequence name |
| tSize | 22407834 | int(10) unsigned | Target sequence size |
| tStart | 3209350 | int(10) unsigned | Alignment start position in target |
| tEnd | 3209859 | int(10) unsigned | Alignment end position in target |
| blockCount | 3 | int(10) unsigned | Number of blocks in alignment |
| blockSizes | 41,353,114, | longblob | Size of each block |
| qStarts | 0,42,395, | longblob | Start of each block in query. |
| tStarts | 3209350,3209391,3209745, | longblob | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 609 | 503 | 4 | 0 | 1 | 1 | 1 | 1 | 1 | - | EC267120 | 516 | 7 | 516 | chr2L | 22407834 | 3209350 | 3209859 | 3 | 41,353,114, | 0,42,395, | 3209350,3209391,3209745, |
| 609 | 451 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | EC266665 | 458 | 7 | 458 | chr2L | 22407834 | 3209335 | 3209786 | 1 | 451, | 0, | 3209335, |
| 609 | 461 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - | EC263974 | 461 | 0 | 461 | chr2L | 22407834 | 3209315 | 3209776 | 1 | 461, | 0, | 3209315, |
| 609 | 523 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | - | EC267020 | 532 | 7 | 532 | chr2L | 22407834 | 3209305 | 3209830 | 1 | 525, | 0, | 3209305, |
| 609 | 492 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | - | EC262409 | 501 | 8 | 500 | chr2L | 22407834 | 3209296 | 3209789 | 2 | 448,44, | 1,449, | 3209296,3209745, |
| 609 | 543 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | - | EC265535 | 550 | 7 | 550 | chr2L | 22407834 | 3209286 | 3209830 | 2 | 458,85, | 0,458, | 3209286,3209745, |
| 585 | 807 | 0 | 0 | 0 | 0 | 0 | 1 | 76 | + | AI403714 | 807 | 0 | 807 | chr2L | 22407834 | 7528 | 8411 | 2 | 588,219, | 0,588, | 7528,8192, |
| 585 | 566 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | + | BF503757 | 567 | 1 | 567 | chr2L | 22407834 | 7542 | 8108 | 1 | 566, | 1, | 7542, |
| 585 | 623 | 0 | 0 | 1 | 0 | 0 | 1 | 76 | + | BF495604 | 625 | 1 | 625 | chr2L | 22407834 | 7542 | 8242 | 2 | 574,50, | 1,575, | 7542,8192, |
| 585 | 758 | 5 | 0 | 2 | 0 | 0 | 0 | 0 | - | BG633257 | 765 | 0 | 765 | chr2L | 22407834 | 8719 | 9484 | 1 | 765, | 0, | 8719, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server