Schema for flyBasePep
  Database: dm3    Primary Table: flyBasePep    Row Count: 21,243   Data last updated: 2008-10-21
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name CG6741-RBvarchar(255) values Name of gene
seq MRLFKTRKSTDTYSTLAAQQQQQQQQQ...longblob   mRNA sequence

Connected Tables and Joining Fields
        dm3.arbExpDistance.query (via flyBasePep.name)
      dm3.arbExpDistance.target (via flyBasePep.name)
      dm3.ceBlastTab.query (via flyBasePep.name)
      dm3.drBlastTab.query (via flyBasePep.name)
      dm3.flyBase2004Xref.name (via flyBasePep.name)
      dm3.flyBaseBlastTab.query (via flyBasePep.name)
      dm3.flyBaseBlastTab.target (via flyBasePep.name)
      dm3.flyBaseCanonical.transcript (via flyBasePep.name)
      dm3.flyBaseGene.name (via flyBasePep.name)
      dm3.flyBaseIsoforms.transcript (via flyBasePep.name)
      dm3.flyBaseNoncoding.name (via flyBasePep.name)
      dm3.flyBaseToCG.name (via flyBasePep.name)
      dm3.flyBaseToDescription.name (via flyBasePep.name)
      dm3.flyBaseToPfam.name (via flyBasePep.name)
      dm3.flyBaseToRefSeq.name (via flyBasePep.name)
      dm3.flyBaseToUniProt.name (via flyBasePep.name)
      dm3.flyP2P.query (via flyBasePep.name)
      dm3.flyP2P.target (via flyBasePep.name)
      dm3.hgBlastTab.query (via flyBasePep.name)
      dm3.mmBlastTab.query (via flyBasePep.name)
      dm3.rnBlastTab.query (via flyBasePep.name)
      dm3.scBlastTab.query (via flyBasePep.name)

Sample Rows
 
nameseq
CG6741-RBMRLFKTRKSTDTYSTLAAQQQQQQQQQQQHQAEGSNISHSSNSSSNKSHTPATCSNRLNKSIVSSTSISSSLPDLHDKSPVMILSCTTLASNGATATAAVTATATGTAATSGGSLQQQQQQHLQHQQQ ...
CG6741-RCMRLFKTRKSTDTYSTLAAQQQQQQQQQQQHQAEGSNISHSSNSSSNKSHTPATCSNRLNKSIVSSTSISSSLPDLHDKSPVMILSCTTLASNGATATAAVTATATGTAATSGGSLQQQQQQHLQHQQQ ...
CG6741-RAMRLFKTRKSTDTYSTLAAQQQQQQQQQQQHQAEGSNISHSSNSSSNKSHTPATCSNRLNKSIVSSTSISSSLPDLHDKSPVMILSCTTLASNGATATAAVTATATGTAATSGGSLQQQQQQHLQHQQQ ...
CG10325-RBMSKFVFDSMLPKYPQFQPFISSHHLTTTPPNSSSAAVAAALAAAAASASASVSASSSSNNNSSNTIAGSNTSNTNNSSSSPSSSSNNNSNLNLSGGSLSPSHLSQHLGQSPHSPVSSSSPFQQHHPQV ...
CG10325-RAMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCG ...
CG10325-RCMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTDTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAGGAGGAGIADLPRYPWMTLTDWMGSPFERVVCG ...
CG11648-RCMSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYP ...
CG11648-RAMSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYP ...
CG11648-RDMSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYP ...
CG11648-RBMQQHHLQQQQQQQQQQEQQHLQEQQQHLQQLHHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQHAVVASSPSSVLQQQQQQSTPTTHSTPTHAVMYEDPPPVPLVAVQQQHLPAPQQQQQLQQQQQQ ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.