Schema for mmBlastTab
  Database: dm3    Primary Table: mmBlastTab    Row Count: 5,950   Data last updated: 2015-05-21
Format description: Blast alignments of Mouse genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query CG10354-RAvarchar(255) values Name of sequence in this assembly (query)
target uc008msr.1varchar(255) values Name of sequence in other assembly (target)
identity 56.85float range Percent identity
aliLength 825int(10) unsigned range Length of alignment
mismatch 313int(10) unsigned range Number of mismatches
gapOpen 10int(10) unsigned range Number of gap openings
qStart 0int(10) unsigned range Start in query (0 based)
qEnd 787int(10) unsigned range End in query (non-inclusive)
tStart 0int(10) unsigned range Start in target (0 based)
tEnd 820int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 888double range Bit score

Connected Tables and Joining Fields
        dm3.arbExpDistance.query (via mmBlastTab.query)
      dm3.arbExpDistance.target (via mmBlastTab.query)
      dm3.ceBlastTab.query (via mmBlastTab.query)
      dm3.drBlastTab.query (via mmBlastTab.query)
      dm3.flyBase2004Xref.name (via mmBlastTab.query)
      dm3.flyBaseBlastTab.query (via mmBlastTab.query)
      dm3.flyBaseBlastTab.target (via mmBlastTab.query)
      dm3.flyBaseCanonical.transcript (via mmBlastTab.query)
      dm3.flyBaseGene.name (via mmBlastTab.query)
      dm3.flyBaseIsoforms.transcript (via mmBlastTab.query)
      dm3.flyBaseNoncoding.name (via mmBlastTab.query)
      dm3.flyBasePep.name (via mmBlastTab.query)
      dm3.flyBaseToCG.name (via mmBlastTab.query)
      dm3.flyBaseToDescription.name (via mmBlastTab.query)
      dm3.flyBaseToPfam.name (via mmBlastTab.query)
      dm3.flyBaseToRefSeq.name (via mmBlastTab.query)
      dm3.flyBaseToUniProt.name (via mmBlastTab.query)
      dm3.flyP2P.query (via mmBlastTab.query)
      dm3.flyP2P.target (via mmBlastTab.query)
      dm3.hgBlastTab.query (via mmBlastTab.query)
      dm3.rnBlastTab.query (via mmBlastTab.query)
      dm3.scBlastTab.query (via mmBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
CG10354-RAuc008msr.156.8582531310078708200888
CG9773-RAuc007arq.156.65233100142274252587e-71264
CG13761-RBuc007dvj.129438268927459174187e-51199
CG8344-RAuc007gku.169.111117339524113716113101525
CG5826-RAuc008icd.168.0619159141232652547e-74274
CG14750-RAuc007lod.243.6172961317441762e-41166
CG14749-RAuc008jaq.231.5834221463516773596974e-45180
CG3408-RAuc007kze.145.09173912017301699e-34141
CG32555-RAuc009fhw.134.2962586173936139572e-162572
CG9333-RBuc033hub.135.42734458930762167361e-139494

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.