Schema for xenoMrna
  Database: droSec1    Primary Table: xenoMrna    Row Count: 4,185,635   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 876int(10) unsigned Number of bases that match that aren't repeats
misMatches 28int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 117int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AF239611varchar(255) Query sequence name
qSize 6926int(10) unsigned Query sequence size
qStart 0int(10) unsigned Alignment start position in query
qEnd 904int(10) unsigned Alignment end position in query
tName super_0varchar(255) Target sequence name
tSize 21120651int(10) unsigned Target sequence size
tStart 3008int(10) unsigned Alignment start position in target
tEnd 4029int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 724,99,81,longblob Size of each block
qStarts 0,724,823,longblob Start of each block in query.
tStarts 21116622,21117406,21117562,longblob Start of each block in target.

Connected Tables and Joining Fields
        droSec1.xenoRefFlat.name (via xenoMrna.qName)
      droSec1.xenoRefGene.name (via xenoMrna.qName)
      droSec1.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5858762800002117+-AF23961169260904super_021120651300840293724,99,81,0,724,823,21116622,21117406,21117562,
5851205700130130++EZ968747184313251532super_021120651546156682135,42,1325,1490,5461,5626,
585882351006152575809+-HP528432445112313989super_0211206515666127088123,237,162,187,158,291,51,24,1231,1378,1666,1846,2033,2203,2902,3965,21107943,21108090,21108440,21110268,21113735,21113969,21114656,21114961,
585882351006152575809+-HP528434443312133971super_0211206515666127088123,237,162,187,158,291,51,24,1213,1360,1648,1828,2015,2185,2884,3947,21107943,21108090,21108440,21110268,21113735,21113969,21114656,21114961,
585199830014081396+-HP47763215710690super_021120651594466222231,51,0,639,21114029,21114656,
58586034900551365555+-HP528395516612312953super_0211206515944127087123,237,162,187,158,291,51,1231,1378,1666,1846,2033,2203,2902,21107943,21108090,21108440,21110268,21113735,21113969,21114656,
58586034900551365555+-HP528396514812132935super_0211206515944127087123,237,162,187,158,291,51,1213,1360,1648,1828,2015,2185,2884,21107943,21108090,21108440,21110268,21113735,21113969,21114656,
58586034900551365555+-HP528397512112132935super_0211206515944127087123,237,162,187,158,291,51,1213,1360,1648,1828,2015,2185,2884,21107943,21108090,21108440,21110268,21113735,21113969,21114656,
58586034900551365555+-HP528398505512312953super_0211206515944127087123,237,162,187,158,291,51,1231,1378,1666,1846,2033,2203,2902,21107943,21108090,21108440,21110268,21113735,21113969,21114656,
58586034900551365555+-HP528399503712132935super_0211206515944127087123,237,162,187,158,291,51,1213,1360,1648,1828,2015,2185,2884,21107943,21108090,21108440,21110268,21113735,21113969,21114656,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.