Schema for xenoRefSeqAli
  Database: droSec1    Primary Table: xenoRefSeqAli    Row Count: 261,826   Data last updated: 2020-08-18
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 7504int(10) unsigned range Number of bases that match that aren't repeats
misMatches 225int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 8int(10) unsigned range Number of inserts in query
qBaseInsert 91int(10) unsigned range Number of bases inserted in query
tNumInsert 20int(10) unsigned range Number of inserts in target
tBaseInsert 9307int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_139891varchar(255) values Query sequence name
qSize 7820int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 7820int(10) unsigned range Alignment end position in query
tName super_0varchar(255) values Target sequence name
tSize 21120651int(10) unsigned range Target sequence size
tStart 2875int(10) unsigned range Alignment start position in target
tEnd 19911int(10) unsigned range Alignment end position in target
blockCount 26int(10) unsigned range Number of blocks in alignment
blockSizes 107,205,136,5,102,453,84,10...longblob   Size of each block
qStarts 0,167,372,508,513,615,1068,...longblob   Start of each block in query.
tStarts 21100740,21100907,21101114,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        droSec1.xenoMrna.qName (via xenoRefSeqAli.qName)
      droSec1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      droSec1.xenoRefGene.name (via xenoRefSeqAli.qName)
      hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585750422500891209307+-NM_139891782007820super_02112065128751991126107,205,136,5,102,453,84,100,59,95,10,16,17,359,204,928,251,26,407,212,205,160,839,2436,99,214,0,167,372,508,513,615,1068,1153,1263,1322,1428,1439,1456,1474,1833,2037,2965,3222,3248,3655,3867,4072,4232,5071,7507,7606,21100740,21100907,21101114,21101253,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21 ...
585746522400891219214+-NM_0011040651379307780super_02112065130081991127107,205,136,5,102,453,84,100,59,95,10,16,17,359,204,928,93,251,26,407,212,205,160,839,2436,99,81,0,167,372,508,513,615,1068,1153,1263,1322,1428,1439,1456,1474,1833,2037,2965,3058,3315,3341,3748,3960,4165,4325,5164,7600,7699,21100740,21100907,21101114,21101253,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21 ...
585737222400891209307+-NM_001104066888607687super_02112065130081991126107,205,136,5,102,453,84,100,59,95,10,16,17,359,204,928,251,26,407,212,205,160,839,2436,99,81,0,167,372,508,513,615,1068,1153,1263,1322,1428,1439,1456,1474,1833,2037,2965,3222,3248,3655,3867,4072,4232,5071,7507,7606,21100740,21100907,21101114,21101253,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21 ...
585737222400891209307+-NM_0011040681401807687super_02112065130081991126107,205,136,5,102,453,84,100,59,95,10,16,17,359,204,928,251,26,407,212,205,160,839,2436,99,81,0,167,372,508,513,615,1068,1153,1263,1322,1428,1439,1456,1474,1833,2037,2965,3222,3248,3655,3867,4072,4232,5071,7507,7606,21100740,21100907,21101114,21101253,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21 ...
585737222400891209307+-NM_0012021351443807687super_02112065130081991126107,205,136,5,102,453,84,100,59,95,10,16,17,359,204,928,251,26,407,212,205,160,839,2436,99,81,0,167,372,508,513,615,1068,1153,1263,1322,1428,1439,1456,1474,1833,2037,2965,3222,3248,3655,3867,4072,4232,5071,7507,7606,21100740,21100907,21101114,21101253,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21 ...
585737222400891209307+-NM_0012021391412007687super_02112065130081991126107,205,136,5,102,453,84,100,59,95,10,16,17,359,204,928,251,26,407,212,205,160,839,2436,99,81,0,167,372,508,513,615,1068,1153,1263,1322,1428,1439,1456,1474,1833,2037,2965,3222,3248,3655,3867,4072,4232,5071,7507,7606,21100740,21100907,21101114,21101253,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21 ...
585737222400891209307+-NM_0012021414212807687super_02112065130081991126107,205,136,5,102,453,84,100,59,95,10,16,17,359,204,928,251,26,407,212,205,160,839,2436,99,81,0,167,372,508,513,615,1068,1153,1263,1322,1428,1439,1456,1474,1833,2037,2965,3222,3248,3655,3867,4072,4232,5071,7507,7606,21100740,21100907,21101114,21101253,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21 ...
585737222400891209307+-NM_1682271370007687super_02112065130081991126107,205,136,5,102,453,84,100,59,95,10,16,17,359,204,928,251,26,407,212,205,160,839,2436,99,81,0,167,372,508,513,615,1068,1153,1263,1322,1428,1439,1456,1474,1833,2037,2965,3222,3248,3655,3867,4072,4232,5071,7507,7606,21100740,21100907,21101114,21101253,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21 ...
5857179214007311812170+-NM_0012021381413007424super_02112065130082257124157,102,453,84,100,59,95,10,16,17,359,204,928,93,251,26,407,212,205,160,839,2436,99,81,0,157,259,712,797,907,966,1072,1083,1100,1118,1477,1681,2609,2702,2959,2985,3392,3604,3809,3969,4808,7244,7343,21098080,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21104983,21105517,21106613,21 ...
5857086214007311712263+-NM_0012021401376407331super_02112065130082257123157,102,453,84,100,59,95,10,16,17,359,204,928,251,26,407,212,205,160,839,2436,99,81,0,157,259,712,797,907,966,1072,1083,1100,1118,1477,1681,2609,2866,2892,3299,3511,3716,3876,4715,7151,7250,21098080,21103395,21103561,21104079,21104163,21104275,21104335,21104438,21104448,21104464,21104481,21104983,21105517,21107567,21 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.