Schema for mrnaOrientInfo
  Database: galGal6    Primary Table: mrnaOrientInfo    Row Count: 40,304   Data last updated: 2018-11-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 14144int(10) unsigned range Start position in chromosome
chromEnd 14304int(10) unsigned range End position in chromosome
name KF835610varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 21smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal6.all_mrna.qName (via mrnaOrientInfo.name)
      galGal6.refFlat.name (via mrnaOrientInfo.name)
      galGal6.refGene.name (via mrnaOrientInfo.name)
      galGal6.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr11414414304KF835610000210
585chr12660927411BX93317700000
585chr12723032716BX92967520000
73chr127230243540M8807240000
585chr13063031346CR38924600000
73chr132320243540CR38885420000
585chr13906940539CR38512520000
585chr13965041875CR39017440000
73chr144773259807BX93304310000
585chr15842658613EU24032701000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.