Schema for all_mrna
  Database: galGal6    Primary Table: all_mrna    Row Count: 32,948   Data last updated: 2018-11-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 159int(10) unsigned range Number of bases that match that aren't repeats
misMatches 1int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 10int(10) unsigned range Number of bases inserted in query
tNumInsert 0int(10) unsigned range Number of inserts in target
tBaseInsert 0int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName KF835610varchar(255) values Query sequence name
qSize 626int(10) unsigned range Query sequence size
qStart 456int(10) unsigned range Alignment start position in query
qEnd 626int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 197608386int(10) unsigned range Target sequence size
tStart 14144int(10) unsigned range Alignment start position in target
tEnd 14304int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 100,60,longblob   Size of each block
qStarts 456,566,longblob   Start of each block in query.
tStarts 14144,14244,longblob   Start of each block in target.

Connected Tables and Joining Fields
        galGal6.all_est.qName (via all_mrna.qName)
      galGal6.mrnaOrientInfo.name (via all_mrna.qName)
      galGal6.refGene.name (via all_mrna.qName)
      galGal6.refSeqAli.qName (via all_mrna.qName)
      galGal6.xenoMrna.qName (via all_mrna.qName)
      galGal6.xenoRefGene.name (via all_mrna.qName)
      galGal6.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58515910011000+KF835610626456626chr119760838614144143042100,60,456,566,14144,14244,
58576928001435-BX93317787978879chr11976083862660927411448,97,360,292,0,48,145,509,26609,26659,26757,27119,
58554110001234935+BX9296755530553chr119760838627230327164221,51,102,177,0,223,274,376,27230,27452,32229,32539,
7319311010041410214278+M88072204602046chr1197608386272302435401128,151,36,51,102,182,113,591,58,471,249,0,28,184,222,273,375,557,670,1264,1322,1797,27230,27259,27415,27452,241279,241589,241965,242161,242756,242817,243291,
5857160000000-CR3892467160716chr119760838630630313461716,0,30630,
7310504400145210126+CR388854109801098chr119760838632320243540611,182,107,34,511,249,0,11,193,300,334,849,32320,32539,33080,33286,242777,243291,
58599120001143459-CR385125102501025chr11976083863906940539581,314,402,107,107,0,95,409,811,918,39069,39150,39465,39966,40432,
58579630000041399-CR3901748323829chr119760838639650418755217,107,182,102,218,3,220,327,509,611,39650,39966,40432,40822,41657,
736261400192214394-BX9330436510649chr1197608386447732598074106,140,41,353,2,108,248,298,44773,259065,259413,259454,
5851870000000+EU2403271880187chr119760838658426586131187,0,58426,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.