Schema for xenoRefFlat
  Database: galGal6    Primary Table: xenoRefFlat    Row Count: 146,058   Data last updated: 2018-11-05
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName snRNA:U2:38ABbvarchar(255) values Name of gene as it appears in genome browser.
name NR_001672varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 58426int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 58479int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 58479int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 58479int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 58426,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 58479,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        galGal6.xenoMrna.qName (via xenoRefFlat.name)
      galGal6.xenoRefGene.name (via xenoRefFlat.name)
      galGal6.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
snRNA:U2:38ABbNR_001672chr1+58426584795847958479158426,58479,
snRNA:U2:34ABaNR_001645chr1+58426585115851158511158426,58511,
snRNA:U2:34ABbNR_001646chr1+58426585115851158511158426,58511,
snRNA:U2:38ABaNR_001673chr1+58426585115851158511158426,58511,
snRNA:U2:14BNR_002130chr1+58426585115851158511158426,58511,
snRNA:U2:34ABcNR_002513chr1+58426585115851158511158426,58511,
Rnu2-10NR_004414chr1+58426586135861358613158426,58613,
RNU2-1NR_002716chr1+58426586145861458614158426,58614,
NR_144262chr1-58430585195851958519158430,58519,
Y47H9A.2NR_000124chr1+58436584995849958499158436,58499,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.