Schema for xenoMrna
  Database: galGal6    Primary Table: xenoMrna    Row Count: 2,881,712   Data last updated: 2018-11-05
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 244int(10) unsigned Number of bases that match that aren't repeats
misMatches 73int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 7int(10) unsigned Number of 'N' bases
qNumInsert 3int(10) unsigned Number of inserts in query
qBaseInsert 102int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 5793int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JW182164varchar(255) Query sequence name
qSize 673int(10) unsigned Query sequence size
qStart 223int(10) unsigned Alignment start position in query
qEnd 649int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 197608386int(10) unsigned Target sequence size
tStart 5320int(10) unsigned Alignment start position in target
tEnd 11437int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 36,102,69,117,longblob Size of each block
qStarts 223,268,376,532,longblob Start of each block in query.
tStarts 197596949,197599611,1976015...longblob Start of each block in target.

Connected Tables and Joining Fields
        galGal6.all_est.qName (via xenoMrna.qName)
      galGal6.all_mrna.qName (via xenoMrna.qName)
      galGal6.refGene.name (via xenoMrna.qName)
      galGal6.refSeqAli.qName (via xenoMrna.qName)
      galGal6.xenoRefFlat.name (via xenoMrna.qName)
      galGal6.xenoRefGene.name (via xenoMrna.qName)
      galGal6.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5852447307310235793+-JW182164673223649chr1197608386532011437436,102,69,117,223,268,376,532,197596949,197599611,197601563,197602949,
58516694072923083+-EZ0241183782278chr119760838653388688315,69,183,2,23,95,197599698,197601563,197602865,
585138620729323167+-LJ5484323521301chr119760838653508724351,69,87,1,58,214,197599662,197601563,197602949,
585162800729323167+-JP309915848203545chr119760838653508766393,69,87,203,302,458,197599620,197601563,197602949,
5859423001611850+-AK1991452882125chr119760838667548721248,69,2,56,197599665,197601563,
58589220013511880+-JU34304023036182chr119760838667548745272,39,36,143,197599641,197601593,
58589220013511880+-JV543786332137283chr119760838667548745272,39,137,244,197599641,197601593,
58589220013511880+-JV650509426207353chr119760838667548745272,39,207,314,197599641,197601593,
58511937001611850+-DQ507361510346508chr119760838667548760287,69,346,439,197599626,197601563,
58512642001611850+-JL020064654413587chr119760838667548772299,69,413,518,197599614,197601563,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.