Schema for affyU95
  Database: hg18    Primary Table: affyU95    Row Count: 13,067   Data last updated: 2006-02-01
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 814smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1737int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 45int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 3int(10) unsigned range Number of bases inserted in query
tNumInsert 8int(10) unsigned range Number of inserts in target
tBaseInsert 7329int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName 1000_atvarchar(255) values Query sequence name
qSize 1866int(10) unsigned range Query sequence size
qStart 64int(10) unsigned range Alignment start position in query
qEnd 1851int(10) unsigned range Alignment end position in query
tName chr16varchar(255) values Target sequence name
tSize 88827254int(10) unsigned range Target sequence size
tStart 30032926int(10) unsigned range Alignment start position in target
tEnd 30042039int(10) unsigned range Alignment end position in target
blockCount 10int(10) unsigned range Number of blocks in alignment
blockSizes 374,230,155,110,132,115,117...longblob   Size of each block
qStarts 15,392,622,777,887,1019,113...longblob   Start of each block in query.
tStarts 30032926,30033300,30035457,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg18.affyRatio.name (via affyU95.qName)
      hg18.knownToU95.value (via affyU95.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
814173724501387329-1000_at1866641851chr1688827254300329263004203910374,230,155,110,132,115,117,190,183,178,15,392,622,777,887,1019,1134,1251,1441,1624,30032926,30033300,30035457,30035715,30035975,30036491,30036868,30037170,30040645,30041861,
9173416100002218234+1001_at341703417chr124724971943539329435609802358,315,111,156,132,141,129,146,145,159,138,297,291,191,211,111,191,114,71,41,97,100,72,0,58,373,484,640,772,913,1042,1188,1333,1492,1630,1927,2218,2409,2620,2731,2922,3036,3107,3148,3245,3345,43539329,43543108,43543490,43545097,43545399,43545689,43546053,43547243,43547645,43549928,43550251,43550562,43551392,43552035,43 ...
20101150001108163658+1002_f_at107211072chr101353747379643794296602661979,161,48,71,48,142,188,142,182,1,80,241,289,370,418,560,748,890,96437942,96444663,96456530,96531615,96531696,96570242,96592583,96599663,96602479,
148711172000019603+1003_s_at111901119chr11134452384118259860118270582251,1068,0,51,118259860,118269514,
1487274260031279621+1004_at276002760chr1113445238411825981111827218010100,1215,368,328,20,183,46,328,28,132,0,100,1315,1683,2012,2032,2216,2272,2600,2628,118259811,118269514,118270730,118271099,118271427,118271448,118271631,118271690,118272019,118272048,
189811031000031087-1005_at110401104chr51808578661721283701721305614371,220,146,367,0,371,591,737,172128370,172129183,172129769,172130194,
136414301000098368-1006_at143101431chr1113445238410214673310215653210101,104,160,134,145,165,126,149,242,105,0,101,205,365,499,644,809,935,1084,1326,102146733,102147952,102148787,102151128,102152220,102152552,102154564,102155153,102155444,102156427,
82137667163022187830+1007_s_at393803938chr6170899992309641443097591021426,103,229,148,100,187,247,96,152,166,111,245,128,219,235,150,226,52,437,162,117,0,426,529,758,906,1006,1193,1440,1536,1688,1854,1965,2210,2338,2557,2792,2942,3169,3221,3659,3821,30964144,30964663,30964957,30966728,30967135,30967757,30968051,30968823,30969027,30970261,30971159,30972376,30972769,30973134,30 ...
602376310163022187832+1007_s_at393803938chr6_cox_hap147316982304770231653821426,103,229,148,100,187,247,96,152,166,111,245,128,219,235,150,226,52,437,162,117,0,426,529,758,906,1006,1193,1440,1536,1688,1854,1965,2210,2338,2557,2792,2942,3169,3221,3659,3821,2304770,2305289,2305583,2307354,2307761,2308385,2308679,2309451,2309655,2310889,2311787,2313004,2313397,2313762,2314456,2315271, ...
60137597170022187832+1007_s_at393803938chr6_qbl_hap245659312103099211486721426,103,229,148,100,187,247,96,152,166,111,245,128,219,235,150,226,52,437,162,117,0,426,529,758,906,1006,1193,1440,1536,1688,1854,1965,2210,2338,2557,2792,2942,3169,3221,3659,3821,2103099,2103618,2103912,2105683,2106090,2106714,2107008,2107780,2107984,2109218,2110116,2111333,2111726,2112091,2112785,2113600, ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.