Schema for all_mrna
  Database: micMur2    Primary Table: all_mrna    Row Count: 272   Data last updated: 2017-07-04
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 822int(10) unsigned range Number of bases that match that aren't repeats
misMatches 21int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 6int(10) unsigned range Number of inserts in query
qBaseInsert 7int(10) unsigned range Number of bases inserted in query
tNumInsert 12int(10) unsigned range Number of inserts in target
tBaseInsert 17399int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName HQ222940varchar(255) values Query sequence name
qSize 850int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 850int(10) unsigned range Alignment end position in query
tName KQ052980v1varchar(255) values Target sequence name
tSize 119921int(10) unsigned range Target sequence size
tStart 35874int(10) unsigned range Alignment start position in target
tEnd 54116int(10) unsigned range Alignment end position in target
blockCount 19int(10) unsigned range Number of blocks in alignment
blockSizes 123,2,17,43,2,67,14,2,12,2,...longblob   Size of each block
qStarts 0,123,126,144,187,189,256,2...longblob   Start of each block in query.
tStarts 35874,43501,43503,43520,435...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      micMur2.mrnaOrientInfo.name (via all_mrna.qName)
      micMur2.xenoRefGene.name (via all_mrna.qName)
      micMur2.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5858222100671217399+HQ2229408500850KQ052980v1119921358745411619123,2,17,43,2,67,14,2,12,2,1,19,8,29,45,285,111,24,37,0,123,126,144,187,189,256,271,274,286,288,289,310,318,348,393,678,789,813,35874,43501,43503,43520,43564,50605,50673,50687,50689,50702,50705,50707,50726,50735,50764,52251,53245,53757,54079,
58582513004121017404+HQ2229418500850KQ052980v1119921358745411613123,4,15,38,29,61,50,16,45,285,111,24,37,0,123,128,144,182,211,276,332,348,393,678,789,813,35874,43501,43505,43520,43559,43589,43652,43705,50764,52251,53245,53757,54079,
58581323007141017406+HQ2229428500850KQ052980v1119921358745411615123,23,35,67,14,2,13,20,10,27,50,280,111,24,37,0,123,148,189,256,271,274,288,310,320,348,398,678,789,813,35874,50538,50562,50605,50673,50687,50689,50706,50726,50737,50764,52256,53245,53757,54079,
5858643000043515-HQ2229438670867KQ052980v111992183028874105110,165,282,246,64,0,110,275,557,803,83028,83798,84258,85013,87346,
5858616000043515-HQ2229448670867KQ052980v111992183028874105110,165,282,246,64,0,110,275,557,803,83028,83798,84258,85013,87346,
58585512000043515-HQ2229458670867KQ052980v111992183028874105110,165,282,246,64,0,110,275,557,803,83028,83798,84258,85013,87346,
58527055018711721752+KC208006273902739KQ053090v12546269670712118714239,292,89,147,27,23,42,39,63,182,250,228,124,983,0,239,531,621,769,797,821,864,903,971,1154,1404,1632,1756,96707,104400,107096,107185,107332,107359,107382,107424,107464,107530,107712,111160,118542,120204,
7313062001118970446+Z71333143001426KQ053115v150682835180315897851087,251,142,68,221,99,87,175,158,20,0,87,338,480,548,769,868,955,1248,1406,518031,535154,537331,546836,553643,556787,563233,567001,589606,589765,
5895492007799161-Z7133314308681426KQ053115v150682835722685819801715,5,47,56,16,27,10,36,82,14,4,19,100,35,5,54,26,4,19,24,71,128,144,172,182,219,301,316,321,341,441,476,481,536,572268,572284,572290,572338,572394,572411,572438,577047,577083,578462,578476,578480,578499,578600,581894,581900,581954,
5857128000031568+HQ22293910993791099KQ053255v167519337256604284,111,24,301,379,663,774,798,3372,4175,4749,5359,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.