Schema for mrnaOrientInfo
  Database: micMur2    Primary Table: mrnaOrientInfo    Row Count: 272   Data last updated: 2017-07-04
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom KQ052980v1varchar(255) values Reference sequence chromosome or scaffold
chromStart 35874int(10) unsigned range Start position in chromosome
chromEnd 54116int(10) unsigned range End position in chromosome
name HQ222940varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      micMur2.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585KQ052980v13587454116HQ22294050000
585KQ052980v13587454116HQ22294150000
585KQ052980v13587454116HQ22294230000
585KQ052980v18302887410HQ22294340000
585KQ052980v18302887410HQ22294440000
585KQ052980v18302887410HQ22294540000
585KQ053090v196707121187KC20800650000
73KQ053115v1518031589785Z7133371000
589KQ053115v1572268581980Z7133321000
585KQ053255v133725660HQ22293930000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.