Schema for rnBlastTab
  Database: mm9    Primary Table: rnBlastTab    Row Count: 17,832   Data last updated: 2012-02-17
Format description: Blast alignments of Rat genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query uc007aeu.1varchar(255) values Name of sequence in this assembly (query)
target RGD:1549780varchar(255) values Name of sequence in other assembly (target)
identity 98.27float range Percent identity
aliLength 520int(10) unsigned range Length of alignment
mismatch 9int(10) unsigned range Number of mismatches
gapOpen 0int(10) unsigned range Number of gap openings
qStart 127int(10) unsigned range Start in query (0 based)
qEnd 647int(10) unsigned range End in query (non-inclusive)
tStart 127int(10) unsigned range Start in target (0 based)
tEnd 647int(10) unsigned range End in target (non-inclusive)
eValue 0double range Expectation value
bitScore 959double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via rnBlastTab.query)
      knownGeneV39.ceBlastTab.query (via rnBlastTab.query)
      knownGeneV39.dmBlastTab.query (via rnBlastTab.query)
      knownGeneV39.drBlastTab.query (via rnBlastTab.query)
      knownGeneV39.foldUtr3.name (via rnBlastTab.query)
      knownGeneV39.foldUtr5.name (via rnBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via rnBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via rnBlastTab.query)
      knownGeneV39.kgAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgColor.kgID (via rnBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via rnBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via rnBlastTab.query)
      knownGeneV39.kgXref.kgID (via rnBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via rnBlastTab.query)
      knownGeneV39.knownBlastTab.query (via rnBlastTab.query)
      knownGeneV39.knownBlastTab.target (via rnBlastTab.query)
      knownGeneV39.knownCanonical.protein (via rnBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via rnBlastTab.query)
      knownGeneV39.knownCds.name (via rnBlastTab.query)
      knownGeneV39.knownGene.name (via rnBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via rnBlastTab.query)
      knownGeneV39.knownGenePep.name (via rnBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via rnBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via rnBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via rnBlastTab.query)
      knownGeneV39.knownToHprd.name (via rnBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via rnBlastTab.query)
      knownGeneV39.knownToMrna.name (via rnBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via rnBlastTab.query)
      knownGeneV39.knownToMupit.name (via rnBlastTab.query)
      knownGeneV39.knownToPfam.name (via rnBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via rnBlastTab.query)
      knownGeneV39.knownToSuper.gene (via rnBlastTab.query)
      knownGeneV39.knownToTag.name (via rnBlastTab.query)
      knownGeneV39.knownToU133.name (via rnBlastTab.query)
      knownGeneV39.knownToU95.name (via rnBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via rnBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via rnBlastTab.query)
      knownGeneV39.mmBlastTab.query (via rnBlastTab.query)
      knownGeneV39.rnBlastTab.query (via rnBlastTab.query)
      knownGeneV39.scBlastTab.query (via rnBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via rnBlastTab.query)
      mm9.affyGnfU74ADistance.query (via rnBlastTab.query)
      mm9.affyGnfU74ADistance.target (via rnBlastTab.query)
      mm9.affyGnfU74BDistance.query (via rnBlastTab.query)
      mm9.affyGnfU74BDistance.target (via rnBlastTab.query)
      mm9.affyGnfU74CDistance.query (via rnBlastTab.query)
      mm9.affyGnfU74CDistance.target (via rnBlastTab.query)
      mm9.bioCycPathway.kgID (via rnBlastTab.query)
      mm9.ccdsKgMap.geneId (via rnBlastTab.query)
      mm9.ceBlastTab.query (via rnBlastTab.query)
      mm9.dmBlastTab.query (via rnBlastTab.query)
      mm9.drBlastTab.query (via rnBlastTab.query)
      mm9.foldUtr3.name (via rnBlastTab.query)
      mm9.foldUtr5.name (via rnBlastTab.query)
      mm9.gnfAtlas2Distance.query (via rnBlastTab.query)
      mm9.gnfAtlas2Distance.target (via rnBlastTab.query)
      mm9.hgBlastTab.query (via rnBlastTab.query)
      mm9.keggPathway.kgID (via rnBlastTab.query)
      mm9.kgAlias.kgID (via rnBlastTab.query)
      mm9.kgColor.kgID (via rnBlastTab.query)
      mm9.kgProtAlias.kgID (via rnBlastTab.query)
      mm9.kgProtMap2.qName (via rnBlastTab.query)
      mm9.kgSpAlias.kgID (via rnBlastTab.query)
      mm9.kgTargetAli.qName (via rnBlastTab.query)
      mm9.kgTxInfo.name (via rnBlastTab.query)
      mm9.kgXref.kgID (via rnBlastTab.query)
      mm9.knownBlastTab.query (via rnBlastTab.query)
      mm9.knownBlastTab.target (via rnBlastTab.query)
      mm9.knownCanonical.protein (via rnBlastTab.query)
      mm9.knownCanonical.transcript (via rnBlastTab.query)
      mm9.knownGene.name (via rnBlastTab.query)
      mm9.knownGeneMrna.name (via rnBlastTab.query)
      mm9.knownGenePep.name (via rnBlastTab.query)
      mm9.knownIsoforms.transcript (via rnBlastTab.query)
      mm9.knownToAllenBrain.name (via rnBlastTab.query)
      mm9.knownToEnsembl.name (via rnBlastTab.query)
      mm9.knownToGnfAtlas2.name (via rnBlastTab.query)
      mm9.knownToKeggEntrez.name (via rnBlastTab.query)
      mm9.knownToLocusLink.name (via rnBlastTab.query)
      mm9.knownToPfam.name (via rnBlastTab.query)
      mm9.knownToRefSeq.name (via rnBlastTab.query)
      mm9.knownToSuper.gene (via rnBlastTab.query)
      mm9.knownToVisiGene.name (via rnBlastTab.query)
      mm9.scBlastTab.query (via rnBlastTab.query)
      mm9.ucscScop.ucscId (via rnBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
uc007aeu.1RGD:154978098.27520901276471276470959
uc007aey.1RGD:130537197.6316940016901699.000000000000001e-82299
uc007aez.1RGD:130537197.6316940016901699.000000000000001e-82299
uc007afa.1RGD:130537183.728610122104831693e-23104
uc007afb.1RGD:130537197.5641100411281690.000000252.4
uc007afc.1RGD:130537197.6316940016901699.000000000000001e-82299
uc007afg.1RGD:302596.21847019203242088e-103368
uc007afh.1RGD:302596.5223080023002302e-118420
uc007afi.2RGD:13098809930130030103012e-152533
uc011wht.1RGD:130988098.0130151030003015e-156545

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.