Schema for xenoMrna
  Database: nomLeu3    Primary Table: xenoMrna    Row Count: 5,028,611   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 73smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 158int(10) unsigned Number of bases that match that aren't repeats
misMatches 29int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 277121int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JO567742varchar(255) Query sequence name
qSize 732int(10) unsigned Query sequence size
qStart 1int(10) unsigned Alignment start position in query
qEnd 188int(10) unsigned Alignment end position in query
tName chr10varchar(255) Target sequence name
tSize 106955855int(10) unsigned Target sequence size
tStart 3664int(10) unsigned Alignment start position in target
tEnd 280972int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 106,81,longblob Size of each block
qStarts 1,107,longblob Start of each block in query.
tStarts 106674883,106952110,longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      nomLeu3.xenoRefFlat.name (via xenoMrna.qName)
      nomLeu3.xenoRefGene.name (via xenoMrna.qName)
      nomLeu3.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
731582900001277121+-JO5677427321188chr1010695585536642809722106,81,1,107,106674883,106952110,
731582900001277121+-JO5678367271188chr1010695585536642809722106,81,1,107,106674883,106952110,
732244100001277121+-JU684004934108373chr1010695585536642810502179,86,108,287,106674805,106952105,
5859119000000++JU872318379255365chr10106955855366537751110,255,3665,
5859119000000++JU940385308184294chr10106955855366537751110,184,3665,
732145100001127543++JU687983602168433chr1010695585536651314732105,160,168,273,3665,131313,
585176174007197913647+-BC024736258002032chr1010695585579142339612183,85,82,249,118,127,335,233,49,309,26,39,0,183,268,434,684,803,988,1323,1556,1639,1965,1993,106932459,106942600,106944063,106946257,106946600,106946728,106946913,106947249,106947486,106947567,106947876,106947902,
5855614000023312++JW637167213108178chr10106955855800011382341,7,22,108,149,156,8000,10998,11360,
5852401360013779382++AF055077258722476chr10106955855858620405818,183,436,184,71,121,392,1032,2,20,203,639,823,894,1015,1444,8586,8605,10746,11648,12579,12768,18944,19373,
5852653430029689123++AF055078290522794chr10106955855858620405918,337,105,436,184,71,121,392,1032,2,20,416,521,957,1141,1212,1333,1762,8586,8605,9001,10746,11648,12579,12768,18944,19373,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.