Schema for mrnaOrientInfo
  Database: petMar1    Primary Table: mrnaOrientInfo    Row Count: 5,968   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Contig1varchar(255) values Reference sequence chromosome or scaffold
chromStart 39796int(10) unsigned range Start position in chromosome
chromEnd 102559int(10) unsigned range End position in chromosome
name AY744919varchar(255) values Accession of EST
intronOrientation 15smallint(6) range Orientation of introns with respect to EST
sizePolyA 19smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 40smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      petMar1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Contig139796102559AY74491915190400
585Contig17124777657AF12947531100
585Contig100331237532AM90068201000
585Contig100771849518627DQ15102801000
585Contig100771849518627DQ15115201000
585Contig100771849518671DQ15135701000
585Contig100771849518721DQ15123901000
585Contig100771853018628EF09462801000
585Contig100771862918721EF09462501000
585Contig100771863418721DQ15114601000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.