Schema for all_mrna
  Database: petMar1    Primary Table: all_mrna    Row Count: 5,968   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 4245int(10) unsigned range Number of bases that match that aren't repeats
misMatches 17int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 5int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 16int(10) unsigned range Number of inserts in target
tBaseInsert 58496int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AY744919varchar(255) values Query sequence name
qSize 4287int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 4268int(10) unsigned range Alignment end position in query
tName Contig1varchar(255) values Target sequence name
tSize 186824int(10) unsigned range Target sequence size
tStart 39796int(10) unsigned range Alignment start position in target
tEnd 102559int(10) unsigned range Alignment end position in target
blockCount 18int(10) unsigned range Number of blocks in alignment
blockSizes 527,225,144,104,181,168,165...longblob   Size of each block
qStarts 0,527,752,896,1000,1181,134...longblob   Start of each block in query.
tStarts 39796,71155,73935,75022,774...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)
      petMar1.all_est.qName (via all_mrna.qName)
      petMar1.mrnaOrientInfo.name (via all_mrna.qName)
      petMar1.xenoMrna.qName (via all_mrna.qName)
      petMar1.xenoRefGene.name (via all_mrna.qName)
      petMar1.xenoRefSeqAli.qName (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58542451705111658496+AY744919428704268Contig11868243979610255918527,225,144,104,181,168,165,27,198,459,88,169,237,150,165,179,452,629,0,527,752,896,1000,1181,1349,1514,1541,1739,2198,2286,2455,2692,2842,3007,3186,3639,39796,71155,73935,75022,77476,81481,82248,83195,84398,87214,89958,90759,92710,95212,96050,98126,101478,101930,
58554616000035848+AF12947560023585Contig118682471247776574133,144,104,181,23,156,300,404,71247,73935,75022,77476,
5852950000000+AM900682834258553Contig10033144012375321295,258,237,
5851320000000+DQ151028510143275Contig100772307518495186271132,143,18495,
5851320000000+DQ151152660299431Contig100772307518495186271132,299,18495,
58514651801717+DQ151357798287463Contig10077230751849518671224,145,287,318,18495,18526,
58520431900000+DQ151239771359585Contig100772307518495187211226,359,18495,
585944000000+EF094628504178276Contig10077230751853018628198,178,18530,
5857031900000+EF094625576277369Contig10077230751862918721192,277,18629,
5856841500000+DQ151146444150237Contig10077230751863418721187,150,18634,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.