Schema for xenoMrna
  Database: petMar1    Primary Table: xenoMrna    Row Count: 4,675,734   Data last updated: 2020-08-22
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 495int(10) unsigned Number of bases that match that aren't repeats
misMatches 229int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 224int(10) unsigned Number of bases inserted in query
tNumInsert 5int(10) unsigned Number of inserts in target
tBaseInsert 10495int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName AY764274varchar(255) Query sequence name
qSize 1482int(10) unsigned Query sequence size
qStart 246int(10) unsigned Alignment start position in query
qEnd 1194int(10) unsigned Alignment end position in query
tName Contig1varchar(255) Target sequence name
tSize 186824int(10) unsigned Target sequence size
tStart 71187int(10) unsigned Alignment start position in target
tEnd 82406int(10) unsigned Alignment end position in target
blockCount 6int(10) unsigned Number of blocks in alignment
blockSizes 144,134,4,102,180,160,longblob Size of each block
qStarts 246,447,581,585,687,1034,longblob Start of each block in query.
tStarts 71187,73943,74212,75024,774...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      petMar1.all_est.qName (via xenoMrna.qName)
      petMar1.all_mrna.qName (via xenoMrna.qName)
      petMar1.xenoRefFlat.name (via xenoMrna.qName)
      petMar1.xenoRefGene.name (via xenoMrna.qName)
      petMar1.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585495229002224510495++AY76427414822461194Contig118682471187824066144,134,4,102,180,160,246,447,581,585,687,1034,71187,73943,74212,75024,77476,82246,
585496228002224510495++CU45888911281201068Contig118682471187824066144,134,4,102,180,160,120,321,455,459,561,908,71187,73943,74212,75024,77476,82246,
585671258004400815247++AK17051318555261855Contig118682471187873639144,134,4,102,181,131,159,14,60,526,727,861,865,967,1148,1315,1534,1795,71187,73943,74212,75024,77476,81481,82247,84421,87303,
5858143910061124923794++AY94746834003692698Contig1186824711879618610144,134,4,102,180,160,72,156,114,139,369,570,704,708,810,1157,1662,2016,2436,2559,71187,73943,74212,75024,77476,82246,87315,90772,95236,96047,
5858163890061124923794++BC16349729321482477Contig1186824711879618610144,134,4,102,180,160,72,156,114,139,148,349,483,487,589,936,1441,1795,2215,2338,71187,73943,74212,75024,77476,82246,87315,90772,95236,96047,
5857453460051238823908++BC16352129321482477Contig118682471187961869144,134,4,102,180,160,72,156,139,148,349,483,487,589,936,1441,1795,2338,71187,73943,74212,75024,77476,82246,87315,90772,96047,
5857563470061196923896++DQ36581529352452544Contig1186824711879618610144,134,4,102,180,160,72,156,12,139,245,446,580,584,686,1033,1541,1895,2266,2405,71187,73943,74212,75024,77476,82246,87315,90772,93301,96047,
58588331200611781023827++AB09625639355172890Contig1186824711879620911144,134,4,102,181,131,165,72,13,87,162,517,718,852,856,958,1139,1306,1798,2253,2476,2728,71187,73943,74212,75024,77476,81481,82247,87315,90834,92842,96047,
58588331200611781023827++AK12813239335622935Contig1186824711879620911144,134,4,102,181,131,165,72,13,87,162,562,763,897,901,1003,1184,1351,1843,2298,2521,2773,71187,73943,74212,75024,77476,81481,82247,87315,90834,92842,96047,
58588331200611451023827++AY12643737701702510Contig1186824711879620911144,134,4,102,181,131,165,72,13,87,162,170,371,505,509,611,792,959,1418,1873,2096,2348,71187,73943,74212,75024,77476,81481,82247,87315,90834,92842,96047,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.